Journal cover Journal topic
Biogeosciences An interactive open-access journal of the European Geosciences Union
Biogeosciences, 7, 763-776, 2010
© Author(s) 2010. This work is distributed under
the Creative Commons Attribution 3.0 License.
25 Feb 2010
Information content of incubation experiments for inverse estimation of pools in the Rothamsted carbon model: a Bayesian perspective
B. Scharnagl1, J. A. Vrugt2,3,*, H. Vereecken1, and M. Herbst1 1Agrosphere Institute (ICG-4), Forschungszentrum Jülich, 52425 Jülich, Germany
2Center for Nonlinear Studies, Los Alamos National Lab., Los Alamos, NM 87545, USA
3Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, The Netherlands
*now at: Department of Civil and Environmental Engineering, University of California, Irvine, Irvine, CA 92697, USA
Abstract. A major drawback of current soil organic carbon (SOC) models is that their conceptually defined pools do not necessarily correspond to measurable SOC fractions in real practice. This not only impairs our ability to rigorously evaluate SOC models but also makes it difficult to derive accurate initial states of the individual carbon pools. In this study, we tested the feasibility of inverse modelling for estimating pools in the Rothamsted carbon model (ROTHC) using mineralization rates observed during incubation experiments. This inverse approach may provide an alternative to existing SOC fractionation methods. To illustrate our approach, we used a time series of synthetically generated mineralization rates using the ROTHC model. We adopted a Bayesian approach using the recently developed DiffeRential Evolution Adaptive Metropolis (DREAM) algorithm to infer probability density functions of the various carbon pools at the start of incubation. The Kullback-Leibler divergence was used to quantify the information content of the mineralization rate data. Our results indicate that measured mineralization rates generally provided sufficient information to reliably estimate all carbon pools in the ROTHC model. The incubation time necessary to appropriately constrain all pools was about 900 days. The use of prior information on microbial biomass carbon significantly reduced the uncertainty of the initial carbon pools, decreasing the required incubation time to about 600 days. Simultaneous estimation of initial carbon pools and decomposition rate constants significantly increased the uncertainty of the carbon pools. This effect was most pronounced for the intermediate and slow pools. Altogether, our results demonstrate that it is particularly difficult to derive reasonable estimates of the humified organic matter pool and the inert organic matter pool from inverse modelling of mineralization rates observed during incubation experiments.

Citation: Scharnagl, B., Vrugt, J. A., Vereecken, H., and Herbst, M.: Information content of incubation experiments for inverse estimation of pools in the Rothamsted carbon model: a Bayesian perspective, Biogeosciences, 7, 763-776,, 2010.
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