Articles | Volume 11, issue 19
https://doi.org/10.5194/bg-11-5607-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/bg-11-5607-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
14 Oct 2014
Research article |
| 14 Oct 2014
Microbial food web dynamics in response to a Saharan dust event: results from a mesocosm study in the oligotrophic Mediterranean Sea
E. Pulido-Villena
Aix-Marseille Université, Université de Toulon, CNRS/INSU, IRD, MIO, UM 110, 13288, Marseille, CEDEX 09, France
A.-C. Baudoux
Université de Brest; Institut Universitaire Européen de la Mer, IUEM; Laboratoire des Sciences de l'Environnement Marin, UMR 6539 LEMAR, Technopôle Brest Iroise, Copernic, 29280 Plouzané, France
now at: CNRS, UMR7144, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
now at: Sorbonne Universités, UPMC Univ Paris 06, UMR7144, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
I. Obernosterer
Sorbonne Universités, UPMC Univ Paris 06, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
CNRS, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
M. Landa
Sorbonne Universités, UPMC Univ Paris 06, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
CNRS, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
J. Caparros
Sorbonne Universités, UPMC Univ Paris 06, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
CNRS, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
P. Catala
Sorbonne Universités, UPMC Univ Paris 06, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
CNRS, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
C. Georges
Sorbonne Universités, UPMC Univ Paris 06, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
CNRS, UMR 7621, Laboratoire d'Océanographie Microbienne, 66650 Banyuls/mer, France
now at: Laboratoire d'Océanologie et Géoscience (LOG), UMR CNRS 8187, Université du Littoral Côte d'Opale (ULCO), 32 avenue Foch, 62930 Wimereux, France
J. Harmand
Laboratoire de Biotechnologie de l'Environnement-INRA, UR0050, avenue des étangs 11100 Narbonne, France
MODEMIC research team, UMR MISTEA, SUPAGRO, 2 place Viala 34060 Montpellier CEDEX 2, France
Laboratoire d'Océanographie de Villefranche/Mer (LOV), CNRS-INSU, UMR7093, Observatoire Océanologique, 06230 Villefranche-sur-Mer, France
Université Pierre et Marie Curie-Paris 6, UMR 7093, LOV, Observatoire Océanologique, 06230 Villefranche-sur-Mer, France
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We report on phosphorus dynamics in the surface layer of the Mediterranean Sea. Highly sensitive phosphate measurements revealed vertical gradients above the phosphacline. The relative contribution of diapycnal fluxes to total external supply of phosphate to the mixed layer decreased towards the east, where atmospheric deposition dominated. Taken together, external sources of phosphate contributed little to total supply, which was mainly sustained by enzymatic hydrolysis of organic phosphorus.
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Frédéric Gazeau, Céline Ridame, France Van Wambeke, Samir Alliouane, Christian Stolpe, Jean-Olivier Irisson, Sophie Marro, Jean-Michel Grisoni, Guillaume De Liège, Sandra Nunige, Kahina Djaoudi, Elvira Pulido-Villena, Julie Dinasquet, Ingrid Obernosterer, Philippe Catala, and Cécile Guieu
Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, https://doi.org/10.5194/bg-18-5011-2021, 2021
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This paper shows that the impacts of Saharan dust deposition in different Mediterranean basins are as strong as those observed in coastal waters but differed substantially between the three tested stations, differences attributed to variable initial metabolic states. A stronger impact of warming and acidification on mineralization suggests a decreased capacity of Mediterranean surface communities to sequester CO2 following the deposition of atmospheric particles in the coming decades.
Evelyn Freney, Karine Sellegri, Alessia Nicosia, Leah R. Williams, Matteo Rinaldi, Jonathan T. Trueblood, André S. H. Prévôt, Melilotus Thyssen, Gérald Grégori, Nils Haëntjens, Julie Dinasquet, Ingrid Obernosterer, France Van Wambeke, Anja Engel, Birthe Zäncker, Karine Desboeufs, Eija Asmi, Hilkka Timonen, and Cécile Guieu
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France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
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Jonathan V. Trueblood, Alessia Nicosia, Anja Engel, Birthe Zäncker, Matteo Rinaldi, Evelyn Freney, Melilotus Thyssen, Ingrid Obernosterer, Julie Dinasquet, Franco Belosi, Antonio Tovar-Sánchez, Araceli Rodriguez-Romero, Gianni Santachiara, Cécile Guieu, and Karine Sellegri
Atmos. Chem. Phys., 21, 4659–4676, https://doi.org/10.5194/acp-21-4659-2021, https://doi.org/10.5194/acp-21-4659-2021, 2021
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Kahina Djaoudi, France Van Wambeke, Aude Barani, Nagib Bhairy, Servanne Chevaillier, Karine Desboeufs, Sandra Nunige, Mohamed Labiadh, Thierry Henry des Tureaux, Dominique Lefèvre, Amel Nouara, Christos Panagiotopoulos, Marc Tedetti, and Elvira Pulido-Villena
Biogeosciences, 17, 6271–6285, https://doi.org/10.5194/bg-17-6271-2020, https://doi.org/10.5194/bg-17-6271-2020, 2020
Cécile Guieu, Fabrizio D'Ortenzio, François Dulac, Vincent Taillandier, Andrea Doglioli, Anne Petrenko, Stéphanie Barrillon, Marc Mallet, Pierre Nabat, and Karine Desboeufs
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Yuri Galletti, Silvia Becagli, Alcide di Sarra, Margherita Gonnelli, Elvira Pulido-Villena, Damiano M. Sferlazzo, Rita Traversi, Stefano Vestri, and Chiara Santinelli
Biogeosciences, 17, 3669–3684, https://doi.org/10.5194/bg-17-3669-2020, https://doi.org/10.5194/bg-17-3669-2020, 2020
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This paper reports the first data about atmospheric deposition of dissolved organic matter (DOM) on the island of Lampedusa. It also shows the implications for the surface marine layer by studying the impact of atmospheric organic carbon deposition in the marine ecosystem. It is a preliminary study, but it is pioneering and important for having new data that can be crucial in order to understand the impact of atmospheric deposition on the marine carbon cycle in a global climate change scenario.
Vincent Taillandier, Louis Prieur, Fabrizio D'Ortenzio, Maurizio Ribera d'Alcalà, and Elvira Pulido-Villena
Biogeosciences, 17, 3343–3366, https://doi.org/10.5194/bg-17-3343-2020, https://doi.org/10.5194/bg-17-3343-2020, 2020
Short summary
Short summary
This study addresses the role played by vertical diffusion in the nutrient enrichment of the Levantine intermediate waters, a process particularly relevant inside thermohaline staircases. Thanks to a high profiling frequency over a 4-year period, BGC-Argo float observations reveal the temporal continuity of the layering patterns encountered during the cruise PEACETIME and their impact on vertical and lateral transfers of nitrate between the deep reservoir and the surface productive zone.
Antonio Tovar-Sánchez, Araceli Rodríguez-Romero, Anja Engel, Birthe Zäncker, Franck Fu, Emilio Marañón, María Pérez-Lorenzo, Matthieu Bressac, Thibaut Wagener, Sylvain Triquet, Guillaume Siour, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 17, 2349–2364, https://doi.org/10.5194/bg-17-2349-2020, https://doi.org/10.5194/bg-17-2349-2020, 2020
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Residence times of particulate metals derived from aerosol deposition in the Sea Surface Microlayer of the Mediterranean Sea ranged from a couple of minutes (e.g., for Fe) to a few hours (e.g., for Cu). Microbial activity seems to play an important role in in this process and in the concentration and distribution of metals between diferent water layers.
Stelios Myriokefalitakis, Akinori Ito, Maria Kanakidou, Athanasios Nenes, Maarten C. Krol, Natalie M. Mahowald, Rachel A. Scanza, Douglas S. Hamilton, Matthew S. Johnson, Nicholas Meskhidze, Jasper F. Kok, Cecile Guieu, Alex R. Baker, Timothy D. Jickells, Manmohan M. Sarin, Srinivas Bikkina, Rachel Shelley, Andrew Bowie, Morgane M. G. Perron, and Robert A. Duce
Biogeosciences, 15, 6659–6684, https://doi.org/10.5194/bg-15-6659-2018, https://doi.org/10.5194/bg-15-6659-2018, 2018
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The first atmospheric iron (Fe) deposition model intercomparison is presented in this study, as a result of the deliberations of the United Nations Joint Group of Experts on the Scientific Aspects of Marine Environmental Protection (GESAMP; http://www.gesamp.org/) Working Group 38. We conclude that model diversity over remote oceans reflects uncertainty in the Fe content parameterizations of dust aerosols, combustion aerosol emissions and the size distribution of transported aerosol Fe.
Kyle R. Frischkorn, Andreas Krupke, Cécile Guieu, Justine Louis, Mónica Rouco, Andrés E. Salazar Estrada, Benjamin A. S. Van Mooy, and Sonya T. Dyhrman
Biogeosciences, 15, 5761–5778, https://doi.org/10.5194/bg-15-5761-2018, https://doi.org/10.5194/bg-15-5761-2018, 2018
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Trichodesmium is a keystone genus of marine cyanobacteria that is estimated to supply nearly half of the ocean’s fixed nitrogen, fuelling primary productivity and the cycling of carbon and nitrogen in the ocean. In our study we characterize Trichodesmium ecology across the western tropical South Pacific using gene and genome sequencing and geochemistry. We detected genes for phosphorus reduction, providing a mechanism for the noted importance of this organism in the ocean's phosphorus cycle.
Sophie Bonnet, Mathieu Caffin, Hugo Berthelot, Olivier Grosso, Mar Benavides, Sandra Helias-Nunige, Cécile Guieu, Marcus Stenegren, and Rachel Ann Foster
Biogeosciences, 15, 4215–4232, https://doi.org/10.5194/bg-15-4215-2018, https://doi.org/10.5194/bg-15-4215-2018, 2018
Mathieu Caffin, Thierry Moutin, Rachel Ann Foster, Pascale Bouruet-Aubertot, Andrea Michelangelo Doglioli, Hugo Berthelot, Cécile Guieu, Olivier Grosso, Sandra Helias-Nunige, Nathalie Leblond, Audrey Gimenez, Anne Alexandra Petrenko, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 15, 2565–2585, https://doi.org/10.5194/bg-15-2565-2018, https://doi.org/10.5194/bg-15-2565-2018, 2018
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We performed N budgets to assess the role of N2 fixation on production and export in the western tropical South Pacific Ocean. We deployed a combination of techniques including high-sensitivity measurements of N input and sediment traps deployment. We demonstrated that N2 fixation was the major source of new N before atmospheric deposition and upward nitrate fluxes. It contributed significantly to organic matter export, indicating a high efficiency of this region to export carbon.
A. R. Bowie, P. van der Merwe, F. Quéroué, T. Trull, M. Fourquez, F. Planchon, G. Sarthou, F. Chever, A. T. Townsend, I. Obernosterer, J.-B. Sallée, and S. Blain
Biogeosciences, 12, 4421–4445, https://doi.org/10.5194/bg-12-4421-2015, https://doi.org/10.5194/bg-12-4421-2015, 2015
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Iron biogeochemical budgets during the natural ocean fertilisation experiment KEOPS-2 showed that complex circulation and transport pathways were responsible for differences in the mode and strength of iron supply, with vertical supply dominant on the plateau and lateral supply dominant in the plume. The exchange of iron between dissolved, biogenic and lithogenic pools was highly dynamic, resulting in a decoupling of iron supply and carbon export and controlling the efficiency of fertilization.
A. N. Schwier, C. Rose, E. Asmi, A. M. Ebling, W. M. Landing, S. Marro, M.-L. Pedrotti, A. Sallon, F. Iuculano, S. Agusti, A. Tsiola, P. Pitta, J. Louis, C. Guieu, F. Gazeau, and K. Sellegri
Atmos. Chem. Phys., 15, 7961–7976, https://doi.org/10.5194/acp-15-7961-2015, https://doi.org/10.5194/acp-15-7961-2015, 2015
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The effect of ocean acidification and changing water conditions on primary (and secondary) marine aerosol emissions is not well understood on a regional or a global scale. To investigate this effect, we deployed mesocosms in the Mediterranean Sea for several weeks during both winter pre-bloom and summer oligotrophic conditions and subjected them to various levels of CO2. We observed larger effects due to the differences between a pre-bloom and oligotrophic environment than due to CO2 levels.
I. Obernosterer, M. Fourquez, and S. Blain
Biogeosciences, 12, 1983–1992, https://doi.org/10.5194/bg-12-1983-2015, https://doi.org/10.5194/bg-12-1983-2015, 2015
M. Fourquez, I. Obernosterer, D. M. Davies, T. W. Trull, and S. Blain
Biogeosciences, 12, 1893–1906, https://doi.org/10.5194/bg-12-1893-2015, https://doi.org/10.5194/bg-12-1893-2015, 2015
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In this manuscript, we present the results of iron uptake measured in the naturally iron-fertilized area during the Kerguelen Ocean and Plateau compared Study 2 cruise (KEOPS2). Iron uptake by bulk community and several size fractions (microplankton, pico-nanoplankton and bacteria) are presented, compared and discussed in the present paper. This work also presents first investigations on the potential competition between bacteria and phytoplankton for access to iron.
S. Blain, J. Capparos, A. Guéneuguès, I. Obernosterer, and L. Oriol
Biogeosciences, 12, 623–635, https://doi.org/10.5194/bg-12-623-2015, https://doi.org/10.5194/bg-12-623-2015, 2015
L. Tremblay, J. Caparros, K. Leblanc, and I. Obernosterer
Biogeosciences, 12, 607–621, https://doi.org/10.5194/bg-12-607-2015, https://doi.org/10.5194/bg-12-607-2015, 2015
A. Malits, U. Christaki, I. Obernosterer, and M. G. Weinbauer
Biogeosciences, 11, 6841–6853, https://doi.org/10.5194/bg-11-6841-2014, https://doi.org/10.5194/bg-11-6841-2014, 2014
U. Christaki, D. Lefèvre, C. Georges, J. Colombet, P. Catala, C. Courties, T. Sime-Ngando, S. Blain, and I. Obernosterer
Biogeosciences, 11, 6739–6753, https://doi.org/10.5194/bg-11-6739-2014, https://doi.org/10.5194/bg-11-6739-2014, 2014
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The concurrent investigation of several parameters has provided insight into two key roles of heterotrophic bacteria, and the microbial food web functioning, at the onset and late phase of the spring phytoplankton bloom induced by natural iron fertilization in the Southern Ocean.
C. Georges, S. Monchy, S. Genitsaris, and U. Christaki
Biogeosciences, 11, 5847–5863, https://doi.org/10.5194/bg-11-5847-2014, https://doi.org/10.5194/bg-11-5847-2014, 2014
C. Guieu, C. Ridame, E. Pulido-Villena, M. Bressac, K. Desboeufs, and F. Dulac
Biogeosciences, 11, 5621–5635, https://doi.org/10.5194/bg-11-5621-2014, https://doi.org/10.5194/bg-11-5621-2014, 2014
K. Desboeufs, N. Leblond, T. Wagener, E. Bon Nguyen, and C. Guieu
Biogeosciences, 11, 5581–5594, https://doi.org/10.5194/bg-11-5581-2014, https://doi.org/10.5194/bg-11-5581-2014, 2014
C. Ridame, J. Dekaezemacker, C. Guieu, S. Bonnet, S. L'Helguen, and F. Malien
Biogeosciences, 11, 4783–4800, https://doi.org/10.5194/bg-11-4783-2014, https://doi.org/10.5194/bg-11-4783-2014, 2014
M. Bressac, C. Guieu, D. Doxaran, F. Bourrin, K. Desboeufs, N. Leblond, and C. Ridame
Biogeosciences, 11, 1007–1020, https://doi.org/10.5194/bg-11-1007-2014, https://doi.org/10.5194/bg-11-1007-2014, 2014
C. Guieu, F. Dulac, C. Ridame, and P. Pondaven
Biogeosciences, 11, 425–442, https://doi.org/10.5194/bg-11-425-2014, https://doi.org/10.5194/bg-11-425-2014, 2014
D. S. Maat, N. J. Bale, E. C. Hopmans, A.-C. Baudoux, J. S. Sinninghe Damsté, S. Schouten, and C. P. D. Brussaard
Biogeosciences, 11, 185–194, https://doi.org/10.5194/bg-11-185-2014, https://doi.org/10.5194/bg-11-185-2014, 2014
C. Ridame, C. Guieu, and S. L'Helguen
Biogeosciences, 10, 7333–7346, https://doi.org/10.5194/bg-10-7333-2013, https://doi.org/10.5194/bg-10-7333-2013, 2013
V. Giovagnetti, C. Brunet, F. Conversano, F. Tramontano, I. Obernosterer, C. Ridame, and C. Guieu
Biogeosciences, 10, 2973–2991, https://doi.org/10.5194/bg-10-2973-2013, https://doi.org/10.5194/bg-10-2973-2013, 2013
K. Wuttig, T. Wagener, M. Bressac, A. Dammshäuser, P. Streu, C. Guieu, and P. L. Croot
Biogeosciences, 10, 2583–2600, https://doi.org/10.5194/bg-10-2583-2013, https://doi.org/10.5194/bg-10-2583-2013, 2013
Related subject area
Biogeochemistry: Open Ocean
Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary
Technical note: Assessment of float pH data quality control methods – a case study in the subpolar northwest Atlantic Ocean
Linking northeastern North Pacific oxygen changes to upstream surface outcrop variations
Underestimation of multi-decadal global O2 loss due to an optimal interpolation method
Reviews and syntheses: expanding the global coverage of gross primary production and net community production measurements using Biogeochemical-Argo floats
Characteristics of surface physical and biogeochemical parameters within mesoscale eddies in the Southern Ocean
Phosphomonoesterase and phosphodiesterase activities in the Eastern Mediterranean Sea during stratified versus mixed conditions
Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region
The fingerprint of climate variability on the surface ocean cycling of iron and its isotopes
Reconstructing the ocean's mesopelagic zone carbon budget: sensitivity and estimation of parameters associated with prokaryotic remineralization
Seasonal cycles of biogeochemical fluxes in the Scotia Sea, Southern Ocean: a stable isotope approach
Absence of photophysiological response to iron addition in autumn phytoplankton in the Antarctic sea-ice zone
Optimal parameters for the ocean's nutrient, carbon, and oxygen cycles compensate for circulation biases but replumb the biological pump
Importance of multiple sources of iron for the upper-ocean biogeochemistry over the northern Indian Ocean
Exploring the role of different data types and timescales in the quality of marine biogeochemical model calibration
All about nitrite: exploring nitrite sources and sinks in the eastern tropical North Pacific oxygen minimum zone
Fossil coccolith morphological attributes as a new proxy for deep ocean carbonate chemistry
Reconstructing ocean carbon storage with CMIP6 Earth system models and synthetic Argo observations
Testing the influence of light on nitrite cycling rates in eastern tropical North Pacific
Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models and optimize observing system design
The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 Earth system models and implications for the carbon cycle
North Atlantic patterns of primary production and phenology in two Earth System Models
Model estimates of metazoans' contributions to the biological carbon pump
Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean
Nitrite cycling in the primary nitrite maxima of the eastern tropical North Pacific
Hotspots and drivers of compound marine heatwaves and low net primary production extremes
Ecosystem impacts of marine heat waves in the northeast Pacific
Tracing the role of Arctic shelf processes in Si and N cycling and export through the Fram Strait: insights from combined silicon and nitrate isotopes
Controls on the relative abundances and rates of nitrifying microorganisms in the ocean
The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific
Influence of GEOTRACES data distribution and misfit function choice on objective parameter retrieval in a marine zinc cycle model
Physiological flexibility of phytoplankton impacts modelled chlorophyll and primary production across the North Pacific Ocean
Observation-constrained estimates of the global ocean carbon sink from Earth system models
Early winter barium excess in the southern Indian Ocean as an annual remineralisation proxy (GEOTRACES GIPr07 cruise)
Controlling factors on the global distribution of a representative marine non-cyanobacterial diazotroph phylotype (Gamma A)
Summer trends and drivers of sea surface fCO2 and pH changes observed in the southern Indian Ocean over the last two decades (1998–2019)
Global nutrient cycling by commercially targeted marine fish
Major processes of the dissolved cobalt cycle in the North and equatorial Pacific Ocean
The impact of the South-East Madagascar Bloom on the oceanic CO2 sink
Nitrite regeneration in the oligotrophic Atlantic Ocean
Bridging the gaps between particulate backscattering measurements and modeled particulate organic carbon in the ocean
Biological production in two contrasted regions of the Mediterranean Sea during the oligotrophic period: an estimate based on the diel cycle of optical properties measured by BioGeoChemical-Argo profiling floats
Acidification of the Nordic Seas
Reconstruction of global surface ocean pCO2 using region-specific predictors based on a stepwise FFNN regression algorithm
Biogeochemical controls on ammonium accumulation in the surface layer of the Southern Ocean
Oxygen export to the deep ocean following Labrador Sea Water formation
N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community and impact of dust under present and future environmental conditions
Dissolution of a submarine carbonate platform by a submerged lake of acidic seawater
Seasonal flux patterns and carbon transport from low-oxygen eddies at the Cape Verde Ocean Observatory: lessons learned from a time series sediment trap study (2009–2016)
Subsurface iron accumulation and rapid aluminum removal in the Mediterranean following African dust deposition
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
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The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
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The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
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This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
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This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
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In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, and Elvira Pulido-Villena
EGUsphere, https://doi.org/10.5194/egusphere-2023-2578, https://doi.org/10.5194/egusphere-2023-2578, 2023
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Distribution of phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea, in winter and spring. The type of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnovertimes) compared to those of PME (saturation at 1 µM, low Km, low turnovertimes) are discussed in regard to possible inequal distribution of PDE and PME among organic material size continuum, and accessibility to phosphodiesters.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
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Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
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Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
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Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
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Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
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Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
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This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
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Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
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Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
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We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-64, https://doi.org/10.5194/bg-2023-64, 2023
Revised manuscript accepted for BG
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We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high light conditions alone do not exclude nitrification from occurring in the surface ocean.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-54, https://doi.org/10.5194/bg-2023-54, 2023
Revised manuscript accepted for BG
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Changes in the seasonality of primary production has been examined using daily data from two earth system models covering the period 1750–2100. The daily data made it possible to detect shifts in the day of the year during which the net primary production reaches its peak value. It was found that the day of peak primary production occurs earlier and earlier during the 21st century and that a major change in the time series occurs in the beginning of the 21st century.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
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Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
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The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
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Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
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Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
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We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Zuozhu Wen, Thomas J. Browning, Rongbo Dai, Wenwei Wu, Weiying Li, Xiaohua Hu, Wenfang Lin, Lifang Wang, Xin Liu, Zhimian Cao, Haizheng Hong, and Dalin Shi
Biogeosciences, 19, 5237–5250, https://doi.org/10.5194/bg-19-5237-2022, https://doi.org/10.5194/bg-19-5237-2022, 2022
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Fe and P are key factors controlling the biogeography and activity of marine N2-fixing microorganisms. We found lower abundance and activity of N2 fixers in the northern South China Sea than around the western boundary of the North Pacific, and N2 fixation rates switched from Fe–P co-limitation to P limitation. We hypothesize the Fe supply rates and Fe utilization strategies of each N2 fixer are important in regulating spatial variability in community structure across the study area.
Claudia Eisenring, Sophy E. Oliver, Samar Khatiwala, and Gregory F. de Souza
Biogeosciences, 19, 5079–5106, https://doi.org/10.5194/bg-19-5079-2022, https://doi.org/10.5194/bg-19-5079-2022, 2022
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Given the sparsity of observational constraints on micronutrients such as zinc (Zn), we assess the sensitivities of a framework for objective parameter optimisation in an oceanic Zn cycling model. Our ensemble of optimisations towards synthetic data with varying kinds of uncertainty shows that deficiencies related to model complexity and the choice of the misfit function generally have a greater impact on the retrieval of model Zn uptake behaviour than does the limitation of data coverage.
Yoshikazu Sasai, Sherwood Lan Smith, Eko Siswanto, Hideharu Sasaki, and Masami Nonaka
Biogeosciences, 19, 4865–4882, https://doi.org/10.5194/bg-19-4865-2022, https://doi.org/10.5194/bg-19-4865-2022, 2022
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We have investigated the adaptive response of phytoplankton growth to changing light, nutrients, and temperature over the North Pacific using two physical-biological models. We compare modeled chlorophyll and primary production from an inflexible control model (InFlexPFT), which assumes fixed carbon (C):nitrogen (N):chlorophyll (Chl) ratios, to a recently developed flexible phytoplankton functional type model (FlexPFT), which incorporates photoacclimation and variable C:N:Chl ratios.
Jens Terhaar, Thomas L. Frölicher, and Fortunat Joos
Biogeosciences, 19, 4431–4457, https://doi.org/10.5194/bg-19-4431-2022, https://doi.org/10.5194/bg-19-4431-2022, 2022
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Estimates of the ocean sink of anthropogenic carbon vary across various approaches. We show that the global ocean carbon sink can be estimated by three parameters, two of which approximate the ocean ventilation in the Southern Ocean and the North Atlantic, and one of which approximates the chemical capacity of the ocean to take up carbon. With observations of these parameters, we estimate that the global ocean carbon sink is 10 % larger than previously assumed, and we cut uncertainties in half.
Natasha René van Horsten, Hélène Planquette, Géraldine Sarthou, Thomas James Ryan-Keogh, Nolwenn Lemaitre, Thato Nicholas Mtshali, Alakendra Roychoudhury, and Eva Bucciarelli
Biogeosciences, 19, 3209–3224, https://doi.org/10.5194/bg-19-3209-2022, https://doi.org/10.5194/bg-19-3209-2022, 2022
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The remineralisation proxy, barite, was measured along 30°E in the southern Indian Ocean during early austral winter. To our knowledge this is the first reported Southern Ocean winter study. Concentrations throughout the water column were comparable to observations during spring to autumn. By linking satellite primary production to this proxy a possible annual timescale is proposed. These findings also suggest possible carbon remineralisation from satellite data on a basin scale.
Zhibo Shao and Ya-Wei Luo
Biogeosciences, 19, 2939–2952, https://doi.org/10.5194/bg-19-2939-2022, https://doi.org/10.5194/bg-19-2939-2022, 2022
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Non-cyanobacterial diazotrophs (NCDs) may be an important player in fixing N2 in the ocean. By conducting meta-analyses, we found that a representative marine NCD phylotype, Gamma A, tends to inhabit ocean environments with high productivity, low iron concentration and high light intensity. It also appears to be more abundant inside cyclonic eddies. Our study suggests a niche differentiation of NCDs from cyanobacterial diazotrophs as the latter prefers low-productivity and high-iron oceans.
Coraline Leseurre, Claire Lo Monaco, Gilles Reverdin, Nicolas Metzl, Jonathan Fin, Claude Mignon, and Léa Benito
Biogeosciences, 19, 2599–2625, https://doi.org/10.5194/bg-19-2599-2022, https://doi.org/10.5194/bg-19-2599-2022, 2022
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Decadal trends of fugacity of CO2 (fCO2), total alkalinity (AT), total carbon (CT) and pH in surface waters are investigated in different domains of the southern Indian Ocean (45°S–57°S) from ongoing and station observations regularly conducted in summer over the period 1998–2019. The fCO2 increase and pH decrease are mainly driven by anthropogenic CO2 estimated just below the summer mixed layer, as well as by a warming south of the polar front or in the fertilized waters near Kerguelen Island.
Priscilla Le Mézo, Jérôme Guiet, Kim Scherrer, Daniele Bianchi, and Eric Galbraith
Biogeosciences, 19, 2537–2555, https://doi.org/10.5194/bg-19-2537-2022, https://doi.org/10.5194/bg-19-2537-2022, 2022
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This study quantifies the role of commercially targeted fish biomass in the cycling of three important nutrients (N, P, and Fe), relative to nutrients otherwise available in water and to nutrients required by primary producers, and the impact of fishing. We use a model of commercially targeted fish biomass constrained by fish catch and stock assessment data to assess the contributions of fish at the global scale, at the time of the global peak catch and prior to industrial fishing.
Rebecca Chmiel, Nathan Lanning, Allison Laubach, Jong-Mi Lee, Jessica Fitzsimmons, Mariko Hatta, William Jenkins, Phoebe Lam, Matthew McIlvin, Alessandro Tagliabue, and Mak Saito
Biogeosciences, 19, 2365–2395, https://doi.org/10.5194/bg-19-2365-2022, https://doi.org/10.5194/bg-19-2365-2022, 2022
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Dissolved cobalt is present in trace amounts in seawater and is a necessary nutrient for marine microbes. On a transect from the Alaskan coast to Tahiti, we measured seawater concentrations of dissolved cobalt. Here, we describe several interesting features of the Pacific cobalt cycle including cobalt sources along the Alaskan coast and Hawaiian vents, deep-ocean particle formation, cobalt activity in low-oxygen regions, and how our samples compare to a global biogeochemical model’s predictions.
Nicolas Metzl, Claire Lo Monaco, Coraline Leseurre, Céline Ridame, Jonathan Fin, Claude Mignon, Marion Gehlen, and Thi Tuyet Trang Chau
Biogeosciences, 19, 1451–1468, https://doi.org/10.5194/bg-19-1451-2022, https://doi.org/10.5194/bg-19-1451-2022, 2022
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During an oceanographic cruise conducted in January 2020 in the south-western Indian Ocean, we observed very low CO2 concentrations associated with a strong phytoplankton bloom that occurred south-east of Madagascar. This biological event led to a strong regional CO2 ocean sink not previously observed.
Darren R. Clark, Andrew P. Rees, Charissa M. Ferrera, Lisa Al-Moosawi, Paul J. Somerfield, Carolyn Harris, Graham D. Quartly, Stephen Goult, Glen Tarran, and Gennadi Lessin
Biogeosciences, 19, 1355–1376, https://doi.org/10.5194/bg-19-1355-2022, https://doi.org/10.5194/bg-19-1355-2022, 2022
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Measurements of microbial processes were made in the sunlit open ocean during a research cruise (AMT19) between the UK and Chile. These help us to understand how microbial communities maintain the function of remote ecosystems. We find that the nitrogen cycling microbes which produce nitrite respond to changes in the environment. Our insights will aid the development of models that aim to replicate and ultimately project how marine environments may respond to ongoing climate change.
Martí Galí, Marcus Falls, Hervé Claustre, Olivier Aumont, and Raffaele Bernardello
Biogeosciences, 19, 1245–1275, https://doi.org/10.5194/bg-19-1245-2022, https://doi.org/10.5194/bg-19-1245-2022, 2022
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Part of the organic matter produced by plankton in the upper ocean is exported to the deep ocean. This process, known as the biological carbon pump, is key for the regulation of atmospheric carbon dioxide and global climate. However, the dynamics of organic particles below the upper ocean layer are not well understood. Here we compared the measurements acquired by autonomous robots in the top 1000 m of the ocean to a numerical model, which can help improve future climate projections.
Marie Barbieux, Julia Uitz, Alexandre Mignot, Collin Roesler, Hervé Claustre, Bernard Gentili, Vincent Taillandier, Fabrizio D'Ortenzio, Hubert Loisel, Antoine Poteau, Edouard Leymarie, Christophe Penkerc'h, Catherine Schmechtig, and Annick Bricaud
Biogeosciences, 19, 1165–1194, https://doi.org/10.5194/bg-19-1165-2022, https://doi.org/10.5194/bg-19-1165-2022, 2022
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This study assesses marine biological production in two Mediterranean systems representative of vast desert-like (oligotrophic) areas encountered in the global ocean. We use a novel approach based on non-intrusive high-frequency in situ measurements by two profiling robots, the BioGeoChemical-Argo (BGC-Argo) floats. Our results indicate substantial yet variable production rates and contribution to the whole water column of the subsurface layer, typically considered steady and non-productive.
Filippa Fransner, Friederike Fröb, Jerry Tjiputra, Nadine Goris, Siv K. Lauvset, Ingunn Skjelvan, Emil Jeansson, Abdirahman Omar, Melissa Chierici, Elizabeth Jones, Agneta Fransson, Sólveig R. Ólafsdóttir, Truls Johannessen, and Are Olsen
Biogeosciences, 19, 979–1012, https://doi.org/10.5194/bg-19-979-2022, https://doi.org/10.5194/bg-19-979-2022, 2022
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Ocean acidification, a direct consequence of the CO2 release by human activities, is a serious threat to marine ecosystems. In this study, we conduct a detailed investigation of the acidification of the Nordic Seas, from 1850 to 2100, by using a large set of samples taken during research cruises together with numerical model simulations. We estimate the effects of changes in different environmental factors on the rate of acidification and its potential effects on cold-water corals.
Guorong Zhong, Xuegang Li, Jinming Song, Baoxiao Qu, Fan Wang, Yanjun Wang, Bin Zhang, Xiaoxia Sun, Wuchang Zhang, Zhenyan Wang, Jun Ma, Huamao Yuan, and Liqin Duan
Biogeosciences, 19, 845–859, https://doi.org/10.5194/bg-19-845-2022, https://doi.org/10.5194/bg-19-845-2022, 2022
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A predictor selection algorithm was constructed to decrease the predicting error in the surface ocean partial pressure of CO2 (pCO2) mapping by finding better combinations of pCO2 predictors in different regions. Compared with previous research using the same combination of predictors in all regions, using different predictors selected by the algorithm in different regions can effectively decrease pCO2 predicting errors.
Shantelle Smith, Katye E. Altieri, Mhlangabezi Mdutyana, David R. Walker, Ruan G. Parrott, Sedick Gallie, Kurt A. M. Spence, Jessica M. Burger, and Sarah E. Fawcett
Biogeosciences, 19, 715–741, https://doi.org/10.5194/bg-19-715-2022, https://doi.org/10.5194/bg-19-715-2022, 2022
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Ammonium is a crucial yet poorly understood component of the Southern Ocean nitrogen cycle. We attribute our finding of consistently high ammonium concentrations in the winter mixed layer to limited ammonium consumption and sustained ammonium production, conditions under which the Southern Ocean becomes a source of carbon dioxide to the atmosphere. From similar data collected over an annual cycle, we propose a seasonal cycle for ammonium in shallow polar waters – a first for the Southern Ocean.
Jannes Koelling, Dariia Atamanchuk, Johannes Karstensen, Patricia Handmann, and Douglas W. R. Wallace
Biogeosciences, 19, 437–454, https://doi.org/10.5194/bg-19-437-2022, https://doi.org/10.5194/bg-19-437-2022, 2022
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In this study, we investigate oxygen variability in the deep western boundary current in the Labrador Sea from multiyear moored records. We estimate that about half of the oxygen taken up in the interior Labrador Sea by air–sea gas exchange during deep water formation is exported southward the same year. Our results underline the complexity of the oxygen uptake and export in the Labrador Sea and highlight the important role this region plays in supplying oxygen to the deep ocean.
Céline Ridame, Julie Dinasquet, Søren Hallstrøm, Estelle Bigeard, Lasse Riemann, France Van Wambeke, Matthieu Bressac, Elvira Pulido-Villena, Vincent Taillandier, Fréderic Gazeau, Antonio Tovar-Sanchez, Anne-Claire Baudoux, and Cécile Guieu
Biogeosciences, 19, 415–435, https://doi.org/10.5194/bg-19-415-2022, https://doi.org/10.5194/bg-19-415-2022, 2022
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We show that in the Mediterranean Sea spatial variability in N2 fixation is related to the diazotrophic community composition reflecting different nutrient requirements among species. Nutrient supply by Saharan dust is of great importance to diazotrophs, as shown by the strong stimulation of N2 fixation after a simulated dust event under present and future climate conditions; the magnitude of stimulation depends on the degree of limitation related to the diazotrophic community composition.
Matthew P. Humphreys, Erik H. Meesters, Henk de Haas, Szabina Karancz, Louise Delaigue, Karel Bakker, Gerard Duineveld, Siham de Goeyse, Andreas F. Haas, Furu Mienis, Sharyn Ossebaar, and Fleur C. van Duyl
Biogeosciences, 19, 347–358, https://doi.org/10.5194/bg-19-347-2022, https://doi.org/10.5194/bg-19-347-2022, 2022
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A series of submarine sinkholes were recently discovered on Luymes Bank, part of Saba Bank, a carbonate platform in the Caribbean Netherlands. Here, we investigate the waters inside these sinkholes for the first time. One of the sinkholes contained a body of dense, low-oxygen and low-pH water, which we call the
acid lake. We use measurements of seawater chemistry to work out what processes were responsible for forming the acid lake and discuss the consequences for the carbonate platform.
Gerhard Fischer, Oscar E. Romero, Johannes Karstensen, Karl-Heinz Baumann, Nasrollah Moradi, Morten Iversen, Götz Ruhland, Marco Klann, and Arne Körtzinger
Biogeosciences, 18, 6479–6500, https://doi.org/10.5194/bg-18-6479-2021, https://doi.org/10.5194/bg-18-6479-2021, 2021
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Low-oxygen eddies in the eastern subtropical North Atlantic can form an oasis for phytoplankton growth. Here we report on particle flux dynamics at the oligotrophic Cape Verde Ocean Observatory. We observed consistent flux patterns during the passages of low-oxygen eddies. We found distinct flux peaks in late winter, clearly exceeding background fluxes. Our findings suggest that the low-oxygen eddies sequester higher organic carbon than expected for oligotrophic settings.
Matthieu Bressac, Thibaut Wagener, Nathalie Leblond, Antonio Tovar-Sánchez, Céline Ridame, Vincent Taillandier, Samuel Albani, Sophie Guasco, Aurélie Dufour, Stéphanie H. M. Jacquet, François Dulac, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 18, 6435–6453, https://doi.org/10.5194/bg-18-6435-2021, https://doi.org/10.5194/bg-18-6435-2021, 2021
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Phytoplankton growth is limited by the availability of iron in about 50 % of the ocean. Atmospheric deposition of desert dust represents a key source of iron. Here, we present direct observations of dust deposition in the Mediterranean Sea. A key finding is that the input of iron from dust primarily occurred in the deep ocean, while previous studies mainly focused on the ocean surface. This new insight will enable us to better represent controls on global marine productivity in models.
Cited articles
Azam, F.: Microbial control of oceanic carbon flux: The plot thickens, Science, 280, 694–696, 1998.
Balino, B., Fasham, M., and Bowles, M.: Ocean biogeochemistry and global change: JGOFS research highlights 1988-2000, IGBP Science 2, 1–32, 2001.
Bonilla-Findji, O., Herndl, G. J., Gattuso, J.-P., and Weinbauer, M. G.: Viral and Flagellate Control of Prokaryotic Production and Community Structure in Offshore Mediterranean Waters, Appl. Env. Microbiol., 75, 4801–4812, 2009.
Boras, J. A., Sala, M. M., Vázquez-Domínguez, E., Weinbauer, M. G., and Vaqué D.: Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal (NW Mediterranean, Environ. Microbiol., 11, 1181–1193, 2009.
Boras, J. A., Sala, M. M., Baltar, F., Aristegui, J., Duarte, C. M., and Vaqué D.: Effect of viruses and protists on bacteria in eddies of the Canary Current region (subtropical northeast Atlantic), Limnol. Oceanogr., 55, 885–898, 2010.
Brussaard, C. P. D.: Optimization of procedures for counting viruses by flow cytometry, Appl. Environ. Microbiol., 70, 1506–1513, 2004.
Carlson, C. A., Ducklow, H. W., and Michales, A. F.: Annual flux of dissolved organic carbon from the euphotic zone in the Northwestern Sargasso Sea, Nature, 371, 405–408, 1994.
Christaki, U., Courties, C., Massana, R., Catala, P., Lebaron, P., Gasol, J. M., and Zubkov, M. V.: Optimized routine flow cytometric enumeration of heterotrophic flagellates using SYBR Green I, Limnol. Oceanogr. Methods, 9, 329–339, 2011.
Delbes, C., Moletta, R., and Godon, J. J.: Monitoring of activity dynamics of an anaerobic digester bacterial community using 16S rRNA polymerase chain reaction-single-strand conformation polymorphism analysis, Environ. Microbiol., 2, 506–515, 2000.
Fuhrman, J.: Marine viruses and their biogeochemical and ecological effects, Nature, 399, 541–548, 1999.
Guerzoni, S., Chester, R., Dulac, F., Herut, B., Loye-Pilot, M. D., Measures, C., Migon, C., Molinaroli, E., Moulin, C., Rossini, P., Saydam, C., Soudine, A., and Ziveri, P.: The role of atmospheric deposition in the biogeochemistry of the Mediterranean Sea, Prog. Oceanogr., 44, 147–190, 1999.
Guieu, C., Dulac, F., Ridame, C., and Pondaven, P.: Introduction to project DUNE, a DUst experiment in a low Nutrient, low chlorophyll Ecosystem, Biogeosciences, 11, 425-442, https://doi.org/10.5194/bg-11-425-2014, 2014.
Herut, B., Zohary, T., Krom, M. D., Mantoura, R. F. C., Pitta, P., Psarra, S., Rassoulzadegan, F., Tanaka, T., and Thingstad, T. F.: Response of East Mediterranean surface water to Saharan dust: On-board microcosm experiment and field observations, Deep Sea Res. (II), 52, 3024–3040, 2005.
Hill, P. G., Zubkov, M. V., and Purdie, D. A.: Differential responses of Prochlorococcus and SAR11-dominated bacterioplankton groups to atmospheric dust inputs in the tropical Northeast Atlantic Ocean, Fems Microbiol. Lett., 306, 82–89, 2010.
Jiang, S. C. Paul, J. H.: The abundance of lysogenic bacteria in marine microbial communities as determined by prophage induction, Mar. Ecol. Prog. Ser., 142, 27–38, 1996.
Jiao, N., G. J. Herndl, G. J., Hansell, D. A., Benner, R., Kattner, G., Wilhem, S. W., Kirchman, D. L., Weinbauer, M. G., Luo, T., Chen, F., and Azam, F.: Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean, Nat. Rev. Microbiol., 8, 593–598, 2010.
Jickells, T. D., An, Z. S., Andersen, K. K., Baker, A. R., Bergametti, G., Brooks, N., Cao, J. J., Boyd, P.W., Duce, R.A., Hunter, K.A., Kawahata, H., Kubilay, N., laRoche, J., Liss, P.S., Mahowald, N., Prospero, J. M., Ridgwell, A. J., Tegen, I., and Torres, R.: Global iron connections between desert dust, ocean biogeochemistry, and climate, Science, 308, 67–71, 2005.
Krom, M. D., Emeis, K. C., and Van Cappellen, P.: Why is the Eastern Mediterranean phosphorus limited?, Prog. Oceanogr., 85, 236–244, 2010.
Labasque, T., Chaumery, C., Aminot, A., and Kergoat, G.: Spectrophotometric Winkler determination of dissolved oxygen: re-examination of critical factors and reliability, Mar. Chem., 88, 53–60, 2004.
Laghdass, M., Blain, S., Besseling, M., Catala, P., Guieu, C., and Obernosterer, I.: Effects of Saharan dust on the microbial community during a large in situ mesocosm experiment in the NW Mediterranean Sea, Aquat. Microb. Ecol., 62, 201–213, 2011.
Lebaron, P., Servais, P., Agogue, H., Courties, C., and Joux, F.: Does the high nucleic acid content of individual bacterial cells allow us to discriminate between active cells and inactive cells in aquatic systems?, Appl. Environ. Microbiol., 67, 1775–1782, 2001.
Lekunberri, I., Lefort, T., Romero, E., Vazquez-Dominguez, E., Romera-Castillo, C., Marrase, C., Peters, F., Weinbauer, M., and Gasol, J. M.: Effects of a dust deposition event on coastal marine microbial abundance and activity, bacterial community structure and ecosystem function, J. Plank. Res., 32, 381–396, 2010.
Li, Q. P. and Hansell, D. A.: Intercomparison and coupling of magnesium-induced co-precipitation and long-path liquid-waveguide capillary cell techniques for trace analysis of phosphate in seawater, Anal. Chim. Ac., 611, 68–72, 2008.
Löye-Pilot, M. D., Martin, J. M., and Morelli, J.: Influence of Saharan dust on the rain acidity and atmospheric input to the Mediterranean, Nature, 321, 427–428, 1986.
Ma, J., Yuan, D. X., Zhang, M., and Liang, Y.: Reverse flow injection analysis of nanomolar soluble reactive phosphorus in seawater with a long path length liquid waveguide capillary cell and spectrophotometric detection, Talanta, 78, 315–320, 2009.
Mahowald, N., Jickells, T. D., Baker, A. R., Artaxo, P., Benitez-Nelson, C., Bergametti, G., Bond, T. C., Chen, Y., Cohen, D. D., Herut, B., Kubilay, N., Losno, R., Luo, C., Maenhaut,W., McGee, K. A., Okin, G. S., Siefert, R. L., and Tsukuda, S.: The global distribution of atmospheric phosphorus sources, concentrations and deposition rates and anthropogenic impacts, Global Biogeochem. Cy., 22, GB4026, https://doi.org/10.1029/2008GB003240, 2008.
Marañón, E., Fernandez, A., Mourino-Carballido, B., Martinez-Garcia, S., Teira, E., Cermeno, P., Choucino, P., Huete-Ortega, M., Fernandez, E., Calvo-Diaz, A., Moran, X. A. G., Bode, A., Moreno-Ostos, E., Varela, M. M., Patey, M. D., and Achterberg, E. P.: Degree of oligotrophy controls the response of microbial plankton to Saharan dust, Limnol. Oceanogr., 55, 2339–2352, 2010.
Markaki, Z., Loye-Pilot, M. D., Violaki, K., Benyahya, L., and Mihalopoulos, N.: Variability of atmospheric deposition of dissolved nitrogen and phosphorus in the Mediterranean and possible link to the anomalous seawater N/P ratio, Mar. Chem., 120, 187–194, 2010.
Middelboe, M.: Bacterial growth rate and marine virus host dynamics, Microb. Ecol., 40, 114–124, 2000.
Middelboe, M. and Jørgensen, N. O. G.: Viral lysis of bacteria: an important source of dissolved amino acids and cell wall compounds', J. Mar. Biol. Ass. UK, 86, 605–612, 2006.
Motegi, C., Nagata, T., Miki, T., Weinbauer, M.G., Legendre, L., and Rassoulzadegan, F.: Viral control of bacterial growth efficiency in marine pelagic environments, Limnol. Oceanogr., 54, 1901–1910, 2009.
Moutin, T., Van Wambeke, F., and Prieur, L.: Introduction to the Biogeochemistry from the Oligotrophic to the Ultraoligotrophic Mediterranean (BOUM) experiment, Biogeosciences, 9, 3817–3825, https://doi.org/10.5194/bg-9-3817-2012, 2012.
Murphy, J. and Riley, J.: A modified single solution method for the determination of phosphate in natural waters, Anal. Chim. Acta, 27, 31–36, 1962.
Murray, A. G. and Jackson, G. A.: Viral dynamics – a model of the effects of size, shape motion and abundance of single-celled planktonic organisms and other particles, Mar. Ecol. Prog. Ser., 89, 103–116, 1992.
Obernosterer, I., Kawasaki, N., and Benner, R.: P-limitation of respiration in the Sargasso Sea and uncoupling of bacteria from P-regeneration in size-fractionation experiments, Aquat. Microb. Ecol., 32, 229–237, 2003.
Oppenheim, A. B., Kobiler, O., Stavans, J., Court, D. L., and Adhya, S.: Switches in bacteriophage lambda development, Annu. Rev. Genet., 39, 409–429, 2005.
Parada, V., Herndl, G. J., and Weinbauer, M. G.: Viral burst size of heterotrophic prokaryotes in aquatic systems, J. Mar. Biol. Assoc. UK, 86, 613–621, 2006.
Paul, J. H.: Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?, The ISME J., 2, 579–589, 2008.
Pulido-Villena, E., Wagener, T., and Guieu, C.: Bacterial response to dust pulses in the western Mediterranean: Implications for carbon cycling in the oligotrophic ocean, Global Biogeochem. Cy., 22, GB1020, https://doi.org/10.1029/2007GB003091, 2008.
Pulido-Villena, E., Rerolle, V., and Guieu, C.: Transient fertilizing effect of dust in P-deficient LNLC surface ocean, Geoph. Res. Lett., 37, L01603, https://doi.org/10.1029/2009GL041415, 2010.
Reinthaler, T., Bakker, K., Manuels, R., van Ooijen, J., and Herndl, G. J.: Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis, Limnol. Oceanogr. Methods, 4, 358–366, 2006.
Ridame, C. and Guieu, C.: Saharan input of phosphate to the oligotrophic water of the open western Mediterranean Sea, Limnol. Oceanogr., 47, 856–869, 2002.
Ridame, C., Dekaezemacker, J., Guieu, C., Bonnet, S., L'Helguen, S., and Malien, F.: Phytoplanktonic response to contrasted Saharan dust deposition events during mesocosm experiments in LNLC environment, Biogeosciences Discuss., 11, 753–796, https://doi.org/10.5194/bgd-11-753-2014, 2014.
Rivkin, R. B. and Anderson, M. R.: Inorganic nutrient limitation of oceanic bacterioplankton, Limnol. Oceanogr., 42, 730–740, 1997.
Romero, E., Peters, F., Marrasé, C., Guadayol, O., Gasol, J. M., and Weinbauer, M.: Coastal Mediterranean plankton stimulation dynamics through a dust storm event: An experimental simulation, Estuar. Coast. Shelf Sci., 93, 27–39, 2011.
Sala, M., Peters, F., Gasol, J. M., Pedros-Alio, C., Marrasé, C., and Vaqué, D.: Seasonal and spatial variations in the nutrient limitation of bacterioplankton growth in the northwestern Mediterranean, Aquat. Microb. Ecol., 27, 47–56, 2002.
Salter, I., Boettjer, D., and Christaki, U.: The effect of inorganic particle concentration on bacteria-virus-nanoflagellate dynamics, Environ. Microbiol., 13, 2768–2777, 2011.
Tanaka, T., Thingstad, T. F., Christaki, U., Colombet, J., Cornet-Barthaux, V., Courties, C., Grattepanche, J.-D., Lagaria, A., Nedoma, J., Oriol, L., Psarra, S., Pujo-Pay, M., and Van Wambeke, F.: Lack of P-limitation of phytoplankton and heterotrophic prokaryotes in surface waters of three anticyclonic eddies in the stratified Mediterranean Sea, Biogeosciences, 8, 525–538, https://doi.org/10.5194/bg-8-525-2011, 2011.
Thingstad, T. F., Zweifel, U. L., Rassoulzadegan, F.: P limitation of heterotrophic bacteria and phytoplankton in the northwest Mediterranean, Limnol. Oceanogr. 43, 88-94, 1998.
Van Wambeke, F., Ghiglione, J.-F., Nedoma, J., Mével, G., and Raimbault, P.: Bottom up effects on bacterioplankton growth and composition during summer-autumn transition in the open NW Mediterranean Sea, Biogeosciences, 6, 705–720, https://doi.org/10.5194/bg-6-705-2009, 2009.
Vaqué, D., Gasol, J. M., and Marrasé, C.: Grazing rates on bacteria: the significance of methodology and ecological factors, Mar. Ecol. Prog. Ser., 109, 263–274, 1994.
Weinbauer, M. G., Brettar, I., and Höfle, M. G.: Lysogeny and virus induced mortality of bacterioplankton in surface, deep, and anoxic marine waters, Limnol. Oceanogr., 48, 1457–1465, 2003.
Wilhelm, S. W. and Suttle, C. A.: Viruses as regulators of nutrient cycles in aquatic environments, in: Microbial biosystems: New frontiers, edited by: Bell, C. R., Brylinsky, M., and Johnson-Green, P., Atlantic Canada Society of Microbial Ecology., 551–556, 2000.
Williamson, S., McDaniel, L., Houchin, L., and Paul, J. H.: Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida, Appl. Environ. Microbiol., 68, 4307–4314, 2002.
Wuttig, K., Wagener, T., Bressac, M., Dammshäuser, A., Streu, P., Guieu, C., and Croot, P. L.: Impacts of dust deposition on dissolved trace metal concentrations (Mn, Al and Fe) during a mesocosm experiment, Biogeosciences, 10, 2583–2600, https://doi.org/10.5194/bg-10-2583-2013, 2013.
Zemb, O., Haegeman, B., Delgenes, J. P., Lebaron, P., and Godon, J. J.: Safum statistical analysis of SSCP fingerprints using PCA projections, dendrograms and diversity estimators, Mol. Ecol. Notes, 7, 767–770, 2007.
Zhang, J. Z. and Chi, J.: Automated analysis of nanomolar concentrations of phosphate in natural waters with liquid waveguide, Environ. Sci. Tech., 36, 1048–1053, 2002.
Zhang, R., Weinbauer, M. G., and Qian, P. Y.: Viruses and flagellates sustain apparent richness and reduce biomass accumulation of bacterioplankton in coastal marine waters, Environ. Microbiol., 9, 2008–2018, 2007.
Zohary, T., Herut, B., Krom, M. D., Mantoura, R. F. C., Pitta, P., Psarra, S., Rassoulzadegan, F., Stambler, N., Tanaka, T., Thingstad, T. F., and Woodward, E. M. S.: P-limited bacteria but N and P co-limited phytoplankton in the Eastern Mediterranean microcosm experiment, Deep-Sea Res., 52, 3011–3023, 2005.
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