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Biogeosciences An interactive open-access journal of the European Geosciences Union
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Volume 8, issue 11
Biogeosciences, 8, 3457-3489, 2011
https://doi.org/10.5194/bg-8-3457-2011
© Author(s) 2011. This work is distributed under
the Creative Commons Attribution 3.0 License.

Special issue: Stable isotopes and biogeochemical cycles in terrestrial...

Biogeosciences, 8, 3457-3489, 2011
https://doi.org/10.5194/bg-8-3457-2011
© Author(s) 2011. This work is distributed under
the Creative Commons Attribution 3.0 License.

Reviews and syntheses 28 Nov 2011

Reviews and syntheses | 28 Nov 2011

Carbon allocation and carbon isotope fluxes in the plant-soil-atmosphere continuum: a review

N. Brüggemann1, A. Gessler2, Z. Kayler2, S. G. Keel3, F. Badeck4, M. Barthel5, P. Boeckx6, N. Buchmann5, E. Brugnoli7, J. Esperschütz8,9, O. Gavrichkova7, J. Ghashghaie10, N. Gomez-Casanovas11, C. Keitel12, A. Knohl5,13, D. Kuptz14, S. Palacio15, Y. Salmon16, Y. Uchida17, and M. Bahn18 N. Brüggemann et al.
  • 1Forschungszentrum Jülich GmbH, Institute of Bio- and Geosciences, Agrosphere Institute (IBG-3), Leo-Brandt-Straße, 52425 Jülich, Germany
  • 2Leibniz Centre for Agricultural Landscape Research, Institute for Landscape Biogeochemistry, Eberswalderstraße 84, 15374 Müncheberg, Germany
  • 3Princeton University, Department of Ecology and Evolutionary Biology, 236 Guyot Hall, Princeton, NJ 08544, USA
  • 4Potsdam Institute for Climate Impact Research (PIK), P.O. Box 601203, 14412 Potsdam, Germany
  • 5ETH Zurich, Institute of Agricultural Sciences, Universitätsstrasse 2, 8092 Zürich, Switzerland
  • 6Gent University, Department of Applied Analytical and Physical Chemistry, Coupure Links 653, 9000 Gent, Belgium
  • 7Consiglio Nazionale delle Ricerche (CNR), Istituto di Biologia Agroambientale e Forestale (IBAF), Via G. Marconi 2, 05010 Porano, Italy
  • 8Technische Universität München, Chair of Soil Ecology, Center of Food and Life Sciences Weihenstephan, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany
  • 9Helmholtz Zentrum München GmbH, German Research Center for Environmental Health, Department of Environmental Genomics, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany
  • 10Laboratoire d'Ecologie, Systématique et Evolution (ESE), CNRS AgroParisTech-UMR 8079, Bâtiment 362, Université de Paris-Sud (XI), 91405 Orsay Cedex, France
  • 11University of Illinois at Chicago, Department of Biological Sciences, 845 West Taylor St, Chicago, IL 60607, USA
  • 12University of Sydney, Faculty of Agriculture, Food and Natural Resources, 107 Cobbitty Rd., Cobbitty 2570, NSW, Australia
  • 13Georg-August-University Göttingen, Büsgen Institute, Chair of Bioclimatology, Büsgenweg 2, 37077 Göttingen, Germany
  • 14Technical University of Munich, Ecophysiology of Plants, Department of Ecology, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, Germany
  • 15Pyrenean Institute of Ecology (CSIC), Av. Regimiento Galicia s/n, Apdo. 64, Jaca, 22700 Huesca, Spain
  • 16University of Zurich, Institute of Evolutionary Biology and Environmental Studies, Winterthurerstrasse 190, 8057 Zurich, Switzerland
  • 17National Institute for Agro-Environmental Sciences, 3-1-3 Kannondai, Tsukuba, 305-8604, Japan
  • 18University of Innsbruck, Institute of Ecology, Sternwartestraße 15, 6020 Innsbruck, Austria

Abstract. The terrestrial carbon (C) cycle has received increasing interest over the past few decades, however, there is still a lack of understanding of the fate of newly assimilated C allocated within plants and to the soil, stored within ecosystems and lost to the atmosphere. Stable carbon isotope studies can give novel insights into these issues. In this review we provide an overview of an emerging picture of plant-soil-atmosphere C fluxes, as based on C isotope studies, and identify processes determining related C isotope signatures. The first part of the review focuses on isotopic fractionation processes within plants during and after photosynthesis. The second major part elaborates on plant-internal and plant-rhizosphere C allocation patterns at different time scales (diel, seasonal, interannual), including the speed of C transfer and time lags in the coupling of assimilation and respiration, as well as the magnitude and controls of plant-soil C allocation and respiratory fluxes. Plant responses to changing environmental conditions, the functional relationship between the physiological and phenological status of plants and C transfer, and interactions between C, water and nutrient dynamics are discussed. The role of the C counterflow from the rhizosphere to the aboveground parts of the plants, e.g. via CO2 dissolved in the xylem water or as xylem-transported sugars, is highlighted. The third part is centered around belowground C turnover, focusing especially on above- and belowground litter inputs, soil organic matter formation and turnover, production and loss of dissolved organic C, soil respiration and CO2 fixation by soil microbes. Furthermore, plant controls on microbial communities and activity via exudates and litter production as well as microbial community effects on C mineralization are reviewed. A further part of the paper is dedicated to physical interactions between soil CO2 and the soil matrix, such as CO2 diffusion and dissolution processes within the soil profile. Finally, we highlight state-of-the-art stable isotope methodologies and their latest developments. From the presented evidence we conclude that there exists a tight coupling of physical, chemical and biological processes involved in C cycling and C isotope fluxes in the plant-soil-atmosphere system. Generally, research using information from C isotopes allows an integrated view of the different processes involved. However, complex interactions among the range of processes complicate or currently impede the interpretation of isotopic signals in CO2 or organic compounds at the plant and ecosystem level. This review tries to identify present knowledge gaps in correctly interpreting carbon stable isotope signals in the plant-soil-atmosphere system and how future research approaches could contribute to closing these gaps.

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