Journal cover Journal topic
Biogeosciences An interactive open-access journal of the European Geosciences Union
Journal topic
Biogeosciences, 15, 2111–2123, 2018
https://doi.org/10.5194/bg-15-2111-2018
Biogeosciences, 15, 2111–2123, 2018
https://doi.org/10.5194/bg-15-2111-2018

Research article 10 Apr 2018

Research article | 10 Apr 2018

# Hurricane Arthur and its effect on the short-term variability of pCO2 on the Scotian Shelf, NW Atlantic

Hurricane Arthur and its effect on the short-term variability of pCO2 on the Scotian Shelf, NW Atlantic
Jonathan Lemay1, Helmuth Thomas1, Susanne E. Craig2, William J. Burt1,a, Katja Fennel1, and Blair J. W. Greenan3 Jonathan Lemay et al.
• 1Department of Oceanography, Dalhousie University, Halifax, NS, Canada
• 2NASA Goddard Space Flight Center, Code 616, Greenbelt, Maryland 20771, USA
• 3Bedford Institute of Oceanography, Fisheries and Oceans Canada, Dartmouth, NS, Canada
• anow at: Dept. of Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, BC, Canada

Correspondence: Helmuth Thomas (helmuth.thomas@posteo.org)

Abstract

The understanding of the seasonal variability of carbon cycling on the Scotian Shelf in the NW Atlantic Ocean has improved in recent years; however, very little information is available regarding its short-term variability. In order to shed light on this aspect of carbon cycling on the Scotian Shelf we investigate the effects of Hurricane Arthur, which passed the region on 5 July 2014. The hurricane caused a substantial decline in the surface water partial pressure of CO2 (pCO2), even though the Scotian Shelf possesses CO2-rich deep waters. High-temporal-resolution data of moored autonomous instruments demonstrate that there is a distinct layer of relatively cold water with low dissolved inorganic carbon (DIC) slightly above the thermocline, presumably due to a sustained population of phytoplankton. Strong storm-related wind mixing caused this cold intermediate layer with high phytoplankton biomass to be entrained into the surface mixed layer. At the surface, phytoplankton begin to grow more rapidly due to increased light. The combination of growth and the mixing of low DIC water led to a short-term reduction in the partial pressure of CO2 until wind speeds relaxed and allowed for the restratification of the upper water column. These hurricane-related processes caused a (net) CO2 uptake by the Scotian Shelf region that is comparable to the spring bloom, thus exerting a major impact on the annual CO2 flux budget.

1 Introduction

Coastal oceans constitute the interface of four compartments of the Earth system: land, ocean, sediment, and atmosphere. Relatively shallow waters in the coastal oceans facilitate the immediate interaction between the atmosphere and sediment (e.g., Thomas et al., 2009; Thomas and Borges, 2012). Coastal oceans receive runoff from land (Chen and Borges, 2009) and are impacted by the open oceans. They are a hot spot for biological production, accounting for a disproportionate amount of global ocean production relative to their surface area (Cai et al., 2003; Borges et al., 2005). Nutrients from rivers, the open ocean (e.g., Thomas et al., 2005), regenerated nutrients, and nutrients from shallow surface sediments fuel primary producers in coastal oceans. Consequently, coastal seas account for one-fifth to one-third of ocean primary production even though they only account for 8 % of the ocean surface area (Walsh, 1991). Due to their dynamic nature, coastal oceans experience much higher spatial and temporal variability (diel, seasonal, and annual) than the open oceans.

The Scotian Shelf is a coastal ocean, and complex multifactorial interactions result in challenges in determining the processes that control the high degree of variability reported in this region (Shadwick et al., 2010, 2011; Signorini et al., 2013; Shadwick and Thomas, 2014). Recent studies of the Scotian Shelf have focused primarily on the monthly, seasonal, and interannual variability of carbon cycling (Shadwick et al., 2010, 2011; Shadwick and Thomas, 2014; Craig et al., 2015), but these longer-term trends are overlain by significant short-term variability (e.g., Vandemark et al., 2011; Thomas et al., 2012) that to date has remained relatively unstudied. Storm activity on the Scotian Shelf has been shown to affect chlorophyll concentrations and the timing of the phytoplankton bloom (e.g., Fuentes-Yaco et al., 2005; Greenan et al., 2004), but little is known regarding the role of short-term variability in governing the carbon cycling on the Scotian Shelf. A deepened mechanistic understanding is required to reliably assess the role of short-term events on longer-term variability and to facilitate future predictions with respect to climate change and ocean acidification. In the present study, we utilize autonomous moored sensors and in situ sampling to investigate the short-term variability of the CO2 on the Scotian Shelf, with a focus on the impact of Hurricane Arthur, which passed the Scotian Shelf region on 5 July 2014.

2 Oceanographic setting

The Scotian Shelf is located in the northwestern (NW) Atlantic Ocean at the boundary between the subtropical and subpolar gyres and extends from the Laurentian Channel to the Gulf of Maine, spanning approximately the region of 43–46 N, 66–60 W (Fig. 1). The primary feature on the Scotian Shelf is the Nova Scotia Current, which is mostly derived from the Gulf of St. Lawrence (Dever et al., 2016).

Figure 1Regional view of the Scotian Shelf with primary currents shown. The red star depicts the location of the SeaHorse and CARIOCA moorings. Reprinted with minor modifications with permission from Shadwick et al. (2010). ©Shadwick et al. (2010).

The Scotian Shelf can be described as a two-layer system in the winter (Figs. 2 and 3) when convective activity and wind-driven mixing control the mixed layer depth (MLD) and prevent stratification of the surface layer. During this period, the MLD is at its deepest and temperature and salinity are homogeneously distributed within the mixed layer. Any deeper layers are beyond the direct impact of seasonal processes. As the MLD shoals during spring and summer due to lower wind speeds, warmer surface temperature, and freshwater input (Urrego-Blanco and Sheng, 2012; Thomas et al., 2012), the Scotian Shelf transitions into a three-layer system (Loder et al., 1997). The top layer of the three-layer system in the summer is warm, shallow, and less saline as result of the increased discharge from the St. Lawrence (Loder et al., 1997). Below the warm, shallow fresh layer is the cold intermediate layer (CIL), which consists of colder, saltier winter water. The third layer, beneath the CIL, consists of the warm slope waters from southern origin (e.g., Loder et al., 1997).

Figure 2Climatologies for the Scotian Shelf observed at station HL2 (44.299 N 63.247 W). (i) Temperature, (ii) salinity, (iii) nitrate, and (iv) Chl a. Reprinted with permission from Shadwick et al. (2011). ©Elsevier.

Figure 3Schematic demonstrating the evolution of the water column over the course of the year. The dashed line intersecting panels (i), (ii), and (iii) represents the mixed layer. SCML in green represents the subsurface chlorophyll maximum layer. Temperature and salinity profiles provide an idealized view of the upper water column; panel (a) corresponds to panel (i), (b) to (ii), and (c) to (iii).

Sea surface temperature (SST) on the Scotian Shelf varies significantly over the course of the year, ranging from approximately 0 C during winter to a mean of 15 C during the summer, with peak highs of 20 C during the summer months (Fig. 2i). Surface salinity (Fig. 2ii) in the shelf region is relatively fresh, ranging from around 32 during the winter to 31.5 during late summer when the peak discharge of the St. Lawrence River arrives (Loder et al., 1997; Shadwick et al., 2011; Dever et al., 2016). Salinity increases further off the shelf as a result of the warm salty water from the Gulf Stream, which transports water south of the Scotian Shelf towards Western Europe.

Nitrate on the shelf is heavily influenced by the growth and decay of phytoplankton (Fig. 2iii, iv). During the winter months when phytoplankton productivity is low and wind-driven mixing of the water column is strongest, nitrate levels at the surface are high. As light levels increase in the spring, a phytoplankton population dominated by diatoms begins to grow, rapidly depleting the nitrate reservoir in the surface waters (Craig et al., 2015). This short but intense bloom heavily influences carbon cycling on the Scotian shelf. During this period, the region shifts from being a source of CO2 to the atmosphere to a sink because of the biological CO2 drawdown (Shadwick et al., 2010, 2011). Chlorophyll a concentration, the commonly used proxy for phytoplankton abundance (Fig. 2iv), demonstrates the intensity of the spring bloom during the months of March–April. The timing of the bloom varies between these two months depending on several factors including the onset of stratification and availability of light (Shadwick et al., 2010; Greenan et al., 2004; Ross et al., 2017). Once the phytoplankton bloom consumes the available nitrate, the assemblage is taken over by smaller phytoplankton that prosper in the higher-temperature, lower-nutrient conditions (Craig et al., 2015; Li et al., 2006).

The subsurface chlorophyll maximum layer (SCML) is a feature almost ubiquitously found in stratified surface waters (Cullen, 2015). During the late spring and summer period, the surface layer on the Scotian Shelf, which is nutrient poor following the intense growth of the spring bloom, becomes strongly thermally stratified. The phytoplankton therefore accumulate in deeper waters where nutrient concentrations are sufficient to support growth and where there is still enough light available to drive photosynthesis (e.g., Cullen, 2015). This occurs at the nutricline, i.e., the transition from the warm, nutrient-poor surface layer to the cooler, comparatively nutrient-rich second layer. Additionally, in these lower light conditions, phytoplankton often employ the survival strategy of photoacclimation, whereby they increase their intracellular chlorophyll concentration to maximize light absorption. This can result in an increased ratio of chlorophyll to carbon (Chl:C ratio) at the SCML (Cullen, 2015). There is a suggestion of this summertime SCML in the climatological data from the region (Fig. 2iv) and in a recent glider study of the Scotian Shelf by Ross et al. (2017).

Observational studies reveal the Scotian Shelf to be a source of CO2 to the atmosphere, except during the period of the spring bloom (Shadwick et al., 2010, 2011; see also Signorini et al., 2013, for a discussion). Fluxes of CO2 to the atmosphere are highly variable outside of the spring bloom period (Shadwick et al., 2010). Wind speeds impact the mixed layer depth, which in turn can impact CO2 fluxes on the shelf (Shadwick et al., 2010; Greenan et al., 2008). DIC increases with depth, which means mixing caused by strong wind events can bring carbon-rich water to the surface. Shadwick et al. (2010, their Fig. 8) demonstrate how weather patterns can have a significant impact on monthly variation of CO2 flux. The strength, timing, and frequency of winter storms impact the timing of the spring bloom (Shadwick et al., 2010). Spectral analyses have shown that storm events occur at periods of 6 days and 3 weeks (Smith et al., 1978; Shadwick et al., 2010; Thomas et al., 2012).

A significant contributor to annual storm activity on the Scotian Shelf comes from hurricanes, with the 2003 hurricane season generating 14 named hurricanes in the Atlantic Ocean (Fuentes-Yaco et al., 2005). Hurricanes that affect the western North Atlantic are formed mostly in the Eastern Atlantic Ocean near Africa (Fuentes-Yaco et al., 2005). After formation, the hurricanes move westward on the trade winds, veer northeast around 30 to 35 N as they meet the eastern prevailing winds from North America, and move towards and often over the Scotian Shelf and/or the Newfoundland Shelf (Fuentes-Yaco et al., 2005). Hurricanes passing through the northwestern Atlantic can entrain cold nutrient-rich water to the surface, which has been found to stimulate primary production (Fuentes-Yaco, 1997; Platt et al., 2005; Han et al., 2012). The timing of storms has also been found to affect the timing and strength of the spring phytoplankton bloom (Greenan et al., 2004).

In this paper, we will focus on the effect of the passage of Hurricane Arthur on pCO2 observed at our study site on the Scotian Shelf. We will consider the partial pressure of CO2, pCO2, conditions before, during, and after the storm's passage using highly temporally resolved measurements and present mechanistic explanations for the observed phenomena.

3 Methods

## 3.1 Sampling procedures

The CARIOCA buoy used in this study was equipped with sensors to acquire hourly measurements at the surface (approximately 1 m of depth) for temperature, conductivity, the partial pressure of CO2 (pCO2), salinity, sea surface temperature (SST), and chlorophyll a fluorescence between 20 February and 31 December 2014. An automated spectrophotometric technique was used to estimate pCO2 and is fully described elsewhere (Bates et al., 2000; Bakker et al., 2001; Bates et al., 2001; Hood and Merlivat, 2001). Conductivity and temperature were measured using a Sea-Bird conductivity sensor (SBE 41) and a Betatherm thermistor, respectively. A WETStar fluorometer (WETLabs) measured chlorophyll a (Chl a) fluorescence. The buoy was deployed at the Halifax Line Station 2 (HL2; 44.3 N, 63.3 W; ∼30km offshore from Halifax, Nova Scotia) from February 2014 to January 2015 in addition to other deployments that took place between 2007 and 2012 (e.g., Thomas et al., 2012).

From April 2007 to the end of July 2007, a SeaHorse moored vertical profiler was placed at the location of HL2, where it acquired profiles from the surface to a depth of approximately 100 m every 2 h. It was equipped with temperature, salinity, and Chl a fluorescence sensors. A complete description of the SeaHorse operation and sensor suite can be found in Greenan et al. (2008) or Craig et al. (2015).

Water column samples were collected through the semi-annual Atlantic Zone Monitoring Program (AZMP) operated by the Canadian Department of Fisheries and Oceans. The AZMP cruises occur during the spring (April) and fall (September–October) every year. Biweekly sampling of HL2 is also conducted whenever weather permits. Water samples are collected using 10 L Niskin bottles mounted on a 24-bottle rosette with a Sea-Bird CTD. Collected samples are then poisoned with mercury chloride (HgCl2) to prevent biological activity before the DIC concentration is measured using a VINDTA 3C system (Versatile Instrument for the Determination of Titration Alkalinity; Marianda). This was also used to determine alkalinity (TA) and DIC, and the measurement method is described in full detail by Johnson et al. (1993), Fransson et al. (2001), or Bates et al. (2005). Certified reference material was provided by Prof. A. Dickson (Scripps Institution of Oceanography) to determine the uncertainty of DIC and TA to ±2 and ±3 µmol kg−1, respectively.

Non-photochemical quenching (NPQ) in phytoplankton is a mechanism by which excess absorbed solar radiation can be dissipated in pathways other than Chl a fluorescence (e.g., heat) and can reduce Chl a fluorescence by up to 80 % (Kiefer, 1973). In order to minimize the impact of NPQ, only nighttime fluorescence from 05:00 UTC was used in analyses of Chl a fluorescence. Chl a fluorescence was regressed against Chl a concentration determined from the fluorometric analysis of in situ water samples; this enabled the creation of a calibration curve for both the CARIOCA and SeaHorse data to allow for a comparison of measurements.

## 3.2 Computational analysis

Temperature-normalized pCO2 was calculated using the equation from Takahashi et al. (2002; Eq. 1).

$\begin{array}{}\text{(1)}& p{\mathrm{CO}}_{\mathrm{2}}\left({T}^{\text{mean}}\right)=p{{\mathrm{CO}}_{\mathrm{2}}}^{\text{obs}}\left[\mathrm{exp}\left(\mathrm{0.0423}\left({T}^{\text{mean}}-{T}^{\text{obs}}\right)\right)\right]\end{array}$

This normalization removes the thermodynamic effects of temperature on pCO2 and reveals the non-temperature-related, i.e., largely biological, effects on pCO2. The mean temperature used for this calculation is 10 C.

Using the method developed by Friis et al. (2003), DIC is normalized to salinity to remove the overlying salinity signal to better determine biological and anthropogenic impacts. DICS represents DIC normalized to salinity, Sobs represents the measured salinity value, DICobs represents the measured DIC value, Sref represents the salinity standard used to calculate DICS, which in this case is 32, and DICS=0 represents the freshwater end-member, which is 601 µmol DIC kg−1 taken from Shadwick et al. (2011).

$\begin{array}{}\text{(2)}& {\text{DIC}}^{S}=\frac{{\text{DIC}}^{\text{obs}}-{\text{DIC}}^{S=\mathrm{0}}}{{S}^{\text{obs}}}×{S}^{\text{ref}}+{\text{DIC}}^{S=\mathrm{0}}\end{array}$

Sea–air fluxes from the CARIOCA dataset were calculated using the flux calculation functions from Wanninkhof (2014; Eq. 3).

$\begin{array}{ll}\text{(3)}& & F=-\mathrm{0.251}×{U}^{\mathrm{2}}×{\left(\frac{\text{Sc}}{\mathrm{660}}\right)}^{-\mathrm{0.5}}×{K}_{\mathrm{0}}& ×\left(p{{\mathrm{CO}}_{\mathrm{2}}}^{\text{Obs}}-p{{\mathrm{CO}}_{\mathrm{2}}}^{\text{Atm}}\right),\end{array}$

where F is in 10−5$\mathrm{mol}\phantom{\rule{0.125em}{0ex}}{\mathrm{m}}^{-\mathrm{2}}\phantom{\rule{0.125em}{0ex}}{\mathrm{h}}^{-\mathrm{1}}$, U is wind speed (m s−1), Sc is the Schmidt number, K0 is gas solubility ($\mathrm{mol}\phantom{\rule{0.125em}{0ex}}{\mathrm{L}}^{-\mathrm{1}}\phantom{\rule{0.125em}{0ex}}{\mathrm{atm}}^{-\mathrm{1}}$), p${\mathrm{CO}}_{\mathrm{2}}^{\mathrm{Obs}}$ (µatm) is observed pCO2, and p${\mathrm{CO}}_{\mathrm{2}}^{\mathrm{Atm}}$ (µatm) is atmospheric pCO2, for which 400 µatm is used. The widely used flux calculations from Wanninkhof (2014) were used and have an estimated 20 % level of uncertainty. Full details regarding the flux equation can be found in Wanninkhof (2014).

## 3.3 Comparison CARIOCA–SeaHorse

For mechanistic analysis, we use the SeaHorse vertical profiler from 2007 to help underpin the observations made from the 2014 CARIOCA dataset. Chl a concentrations determined in the laboratory through the fluorometric analysis of in situ water samples were regressed against factory-calibrated nighttime fluorescence from the CARIOCA and SeaHorse datasets. The r2 (RMSE) values were found to be 0.532 (0.2 mg m−3) and 0.743 (0.4 mg m−3) for CARIOCA and SeaHorse, respectively. The poor agreement between the bottle and fluorescence Chl a estimates is unsurprising since factory conversions of fluorescence to chlorophyll concentration rarely correspond well. This is due to several factors that include differences in fluorescence yield between the factory calibration standard and natural phytoplankton, differences in the water mass sampled (small volume illuminated by the fluorometers vs. the larger water mass sampled by the Niskin bottle), and the fact that both estimates are subject to significant uncertainties. For these reasons, fluorescence estimates of Chl a will be used in a qualitative manner to examine patterns and trends rather than to determine exact concentrations.

A subset of the CARIOCA data collected from 9–17 June (year days 160–168) 2007 was used to compare with the SeaHorse data (Fig. 4). During this time, the CARIOCA and SeaHorse instruments were simultaneously deployed, allowing for a comparison between the two datasets. The fluorescence for both datasets was converted to chlorophyll using the calibration curves described above. Both sets showed chlorophyll of similar magnitude and a similar trend over the time series (Fig. 4).

Figure 4The 2007 CARIOCA dataset for 9–17 June with the x axis representing year days. The black line is pCO2 (µatm), the red line is wind (m s−1), the blue line solid is calibrated CARIOCA fluorescence (mg m−3), and the blue dashed line is calibrated SeaHorse fluorescence (mg m−3).

4 Results and discussion

## 4.1 Observations of pCO2, wind speed, and fluorescence in 2014

Annual pCO2 data from the 2014 CARIOCA dataset reveal that there is significant variability over the course of 2014 (Fig. 5a). Although impacted by the variability, the key annual features are obvious and include the phytoplankton bloom (year days 80–110), a summer baseline (year days 150–300), and a winter baseline (year days 50–75 and 300–365). The variability (or amplitude of variability) in pCO2 is more pronounced during the summer months compared to the winter and spring bloom periods (see also Thomas et al., 2012). The low variability during the winter and the bloom is likely a result of the deeper, homogenous surface mixed layer, which in turn acts as a buffer for any short-term variability. The data used in the present paper reflect the reoccurring winter storm pattern, with a periodicity of approximately 6 days as reported earlier for the region (Smith et al., 1978; Shadwick et al., 2010; Thomas et al., 2012).

Figure 5Time series data for 2014 collected from the CARIOCA buoy with the x axis representing year day. Panel (a) shows pCO2 in µatm, revealing a large amount of variation over the course of the year with a minimum during the spring bloom and a high maximum over the course of the summer. Panel (b) shows wind speeds in m s−1, with higher wind speeds during the winter period and lower speeds during the summer. Panel (c) shows fluorescence in arbitrary units with a spring bloom clearly visible and the rest of the year with generally low values. There is some evidence of a prolonged fall bloom after year day 300. The red bands represent the period during which Hurricane Arthur (5 July 2014) took place and was selected as this feature stands out amongst the others.

Wind speeds for 2014 (Fig. 5b) show that during the winter, winds are stronger on the Scotian Shelf, with higher storm frequency, while wind speeds are generally lower during the spring and summer months. During the period of Hurricane Arthur, wind speeds of up to 30 m s−1 were observed.

Fluorescence over the year (Fig. 5c) clearly shows the spring bloom increase of up to a factor of 4 above the winter baseline. Similarly, during Hurricane Arthur, there is a doubling in fluorescence above the summer baseline values compared to the adjacent days. Later in the year, around year day 300, the fluorescence shows somewhat elevated values due to the minor fall bloom that occurs as increased wind speeds begin to deepen the mixed layer, bringing nutrients to the surface (Greenan et al., 2004).

Figure 6Observations during Hurricane Arthur taken from the CARIOCA 2014 dataset, with the x axis representing year days. Each panel has pCO2 in black (µatm) and pCO2(Tmean; µatm) in blue, with a different variable in each panel overlain: (a) temperature, (b) wind speed, (c) flourescence, and (d) salinity. The gray box in panel (d) is used to highlight the change in salinity.

Figure 7Pre-storm (a) and post storm (b) vertical profiles taken from in situ samples for HL2 collected in 2014. (a) Salinity, temperature (C), and density (kg m−3) were collected on 28 June, 7 days before Hurricane Arthur. (b) Post-storm DIC (µmol kg−1) profiles for 22 July and 3 August 2014 collected at HL2 along with their corresponding DICnorm profiles normalized to a salinity value of 32, revealing the reestablishment of the pre-storm situation.

## 4.2 Hurricane Arthur

A prevalent feature of the time series is the sharp decrease in pCO2 as wind speeds increase during the hurricane (Fig. 5, days 186–193). Dissolved inorganic carbon increases with depth in this region (Shadwick et al., 2014), and it is therefore expected that increased wind speed would increase pCO2 as more carbon-rich water is mixed to the surface. However, wind and pCO2 are negatively correlated ($r=-\mathrm{0.77}$, significance level α=0.05; data not shown) for the whole year. Decreases in pCO2 with increases in wind are most evident from spring to early fall. This coincides with the period during which the water column becomes a three-layer system as a result of solar insolation and increased discharge from the Gulf of St. Lawrence (Loder et al., 1997). For this study, we chose the most prominent decrease in pCO2, which occurred during Hurricane Arthur on 5 July. The underlying assumption is that Hurricane Arthur can be compared to other periods during which low pCO2 is correlated with high wind events within the spring to early fall period.

To identify the cause of the decrease in pCO2 when wind speeds are high, surface water properties observed during the Hurricane Arthur period are examined in detail (Fig. 6). SST drops by roughly 6 C over a half-day period, indicating that water from the cold intermediate layer (CIL) was mixed into the surface layer by strong winds, causing rapid cooling (Fig. 6a). However, upon close inspection, it can be seen that the pCO2 (Tmean) decrease occurs prior to the temperature decrease, indicating that a non-temperature-related CO2 uptake process is at play before wind-driven CIL entrainment occurs (Fig. 6a). The disconnect between temperature and pCO2 can be explained by considering the position of the subsurface chlorophyll maximum layer (SCML, Fig. 3). This layer straddles the thermocline between layers 1 and 2, where phytoplankton can utilize nutrients diffusing across the boundary and still receive enough light for photosynthesis. As the upper layer is mixed by wind, these phytoplankton are redistributed throughout the upper layer where they experience increased light exposure (compared with that at the SCML) that allows them to photosynthesize more efficiently and therefore draw down more CO2.

Following the initial mixing of the surface layer, mixing energy then becomes sufficient to entrain waters from the deeper CIL between year days 186 and 187. This results in a rise in pCO2 (Tmean), a decrease in temperature (Fig. 6a), and an increase in salinity (Fig. 6d). The increase in salinity occurs in two separate steps (Fig. 6d, dashed gray box): the first coincides with the sharp decline in pCO2 (Tmean), indicating the redistribution of phytoplankton from the SCML throughout the surface layer and their corresponding uptake of CO2. This is also evident in an initial increase in fluorescence prior to the salinity maximum (Fig. 6c and d). The second step aligns with the sharp increase in pCO2 (Tmean), pointing to continued vertical mixing into deeper saline waters rich in DIC from the CIL. When compared to the wind speeds (Fig. 6c), the second step also occurs during the wind speed maximum, when mixing would be at its strongest. Figure 2ii shows the three-layer system during the summer (dark blue, blue, and yellow layers), with approximately one salinity unit of difference between each of the climatological mean layer values. The magnitude of salinity change during Hurricane Arthur is comparable.

Chlorophyll a fluorescence increases by approximately 40 % during the hurricane, indicating that the mixed conditions of the water column favor phytoplankton growth (Fig. 6c). Nutrients at the surface are depleted during the summer months (Fig. 2iii), and therefore the response of the phytoplankton implies that the hurricane mixed nutrients upward from deeper in the water column. This line of argument is also supported by the observed corresponding salinity increase. Wind-driven mixing breaks through the freshwater layer at the surface, reaching into the deeper saline waters of the CIL where nitrate is more abundant. Interestingly, despite the increase in chlorophyll a fluorescence (and implied phytoplankton abundance) during year days 187–190 (Fig. 6c), pCO2 (Tmean) continues to rise. This suggests that, despite increased primary productivity produced by the mixing event, the study site is a net source of CO2 during this time as the entrainment of CO2-rich deeper waters outcompetes the effects of photosynthetic CO2 fixation.

Normalizing the DIC observations from HL2 to a constant salinity (of 32) reveals the biological DIC fingerprint (Fig. 7b). This approach yields a minimum in DIC in the subsurface layer at a depth of approximately 20–25 m, which indicates DIC uptake by phytoplankton. Further support for the existence of this enclosed layer is provided by a study by Shadwick et al. (2011), in which negative apparent oxygen utilization (AOU) values at this depth level were observed during the summer period (their Fig. 13). The enclosed layer is both sufficiently shallow for photosynthesis to occur and sufficiently deep to supply the required nutrients through vertical diffusion across the nutricline (Fig. 2). When comparing the temperature minimum and salinity maximum from Fig. 6 with the T∕S profile of Fig. 7 (see also the discussion below of Fig. 9), a deepening of the mixed layer to around 50 m is revealed, which matches well with the DIC profiles. Figure 7a also shows that the density steadily increases with depth and that the DIC minimum lies below the upper part of the mixed layer in a stable layer between waters of lower (above) and higher (below) density.

Figure 8SeaHorse vertical time series data collected at HL2. Fluorescence data are in mg m−3 and calibrated to in situ bottle data collected at HL2. The white gap represents when the mooring was removed from the water for repairs. The black line represents the mixed layer depth in meters. The red line is the DICnorm profile (3 August 2014) from Fig. 7, with its scale at the top right of the figure. Please note that the DIC profile is collected from 2014, while the SeaHorse data are from 2007. This comparison is made to help underpin the mechanistic understanding of the water column structure.

Figure 9SeaHorse snapshots of a storm event between 9 June and 17 June 2007. The x axis contains chlorophyll (mg m−3), salinity, temperature (C), and density (kg m−3), and the y axis is depth in meters. Wind speeds (m s−1) for each day (05:00 to correspond with the time of SeaHorse data) are included in each panel. Fluorescence values are calibrated to in situ bottle data collected at HL2. The right-hand panels show the Brunt–Väisälä frequency for the respective days.

Table 1Average daily sea–air fluxes (mmol m−2 day−1) for each month available for 2014 using the Wanninkhof (2014) method. July is broken into three components: the month as a whole, the 8 days Hurricane Arthur impacted pCO2, and the remaining 22 days averaged without Hurricane Arthur. pCO2 (µatm), wind speed (m s−1), temperature (C), and salinity are averaged for each month (or segment in the case of Arthur and no Arthur).

To shed light on the processes occurring within the CIL, we employ high-resolution water column data at HL2 collected from the 2007 SeaHorse vertical profiler. Although the SeaHorse data were collected during a different year, we assume that the observed features are present every year as characteristics of the overall system. The data from the SeaHorse profiler reveal a variable but persistent chlorophyll a maximum below the surface post-spring into summer (Fig. 8). This persistent chlorophyll a maximum occurs at roughly 25 m below the surface. This matches well with the profiles in Fig. 7 that display normalized DIC minima at roughly the same depth.

A snapshot of SeaHorse surface profiles from 9–17 June 2007 was extracted and compared to data from the CARIOCA buoy during the same period (Fig. 4; see Methods). As with Hurricane Arthur (Fig. 6), a passing storm (of weaker strength) during this period shows the same negative correlation between pCO2 and wind speed; pCO2 decreases for a period of time as wind speeds increase. There is also an increase in chlorophyll a for both the CARIOCA and SeaHorse data (Fig. 4), showing that both instruments detect the increase at a similar rate.

The selected three days shown in Fig. 9 reveal the evolution of the water column during the 2007 storm event (same event as Fig. 4). Before the storm there is a subsurface chlorophyll maximum, which is below the maximum of the density gradient. The Brunt–Väisälä frequency (Fig. 9) also shows stable stratification at roughly 18 m of depth on 9 June, followed by stable stratification at 38 m for 15 June, and on 17 June, stratification stabilizes further up the water column at 25 m. Once the storm approaches the water column becomes mixed, increasing surface salinity and chlorophyll a as well as homogenizing water density for the top 40 m. In this example, however, temperature does not decrease at the surface as in Fig. 6. However, Hurricane Arthur was a much stronger storm that resulted in deeper mixing of the water column and more cooling of the SST. When the storm subsides, the water column restores within 2 days to its original state. Surface chlorophyll and salinity return roughly to their pre-storm levels, and the SCML is again below the density gradient. The data presented in Fig. 9 – in particular temperature – show that lateral processes, either cross-shelf or along-shelf, may have impacted the system as well. These features, however, cannot be further resolved by referring to single-point moored observations.

With water column data including fluorescence, Fig. 6c is then analyzed to determine how much of the fluorescence is attributed to new growth or mixing. As discussed by Cullen (2015) the SCML contains a higher ratio of chlorophyll a to carbon as a result of survival strategy in reduced light; therefore, it can be speculated that the rapid increase in fluorescence could be the result of redistributed cells rather than new production. Integrating salinity over a depth of 50 m for 9 and 15 June (Fig. 9) yields a constant salinity inventory of 1474 and 1482 m, respectively (unit {m} : salinity{unitless} × integration depth {m}). Based on the assumption that mixing is conservative, integration of chlorophyll a for 9 and 15 June is also performed. The results were 105 and 158 mg Chl m−2, respectively, indicating that the majority of chlorophyll a (approximately two-thirds) observed at the surface is redistributed over the 5-day period during which the integration took place. The growth of the remaining 53 mg Chl m−2 (approximately one-third) can be attributed to rapid phytoplankton growth that would be expected to take place as a result of nutrients being mixed to the lit surface layer. This helps explain the rapid increase in fluorescence observed in Fig. 6c as most of the increase is due to redistributed phytoplankton from the SCML.

## 4.3 Impact of Hurricane Arthur on carbon cycling

In order to quantitatively estimate the direct impact Hurricane Arthur had on carbon cycling, air–sea fluxes were calculated for 2014 (Table 1). The average daily flux for July was 0 mmol C m−2 day−1; however, when the impact of Hurricane Arthur is removed from the average the new flux value is 7 mmol C m−2 day−1. If Hurricane Arthur was averaged alone, the flux would be 19 mmol C m−2 day−1, nearly half the rate observed during the phytoplankton bloom (45 mmol C m−2 day−1). The impact of the hurricane was substantial enough to cancel out the overall emission of CO2 to the atmosphere for the month of July. This indicates that short-term storm events can have a significant impact on annual pCO2 cycling for the Scotian Shelf in the regions affected by the storm.

5 Conclusions

The data provide compelling evidence that there is an interaction between wind speed, pCO2, and subsurface phytoplankton. However, the timing of a storm event dictates the strength of its impact. Previous work has shown that deeper water is rich in DIC compared to the surface, and it was expected that the mixing of deeper water would increase pCO2 as a result. However, subsurface phytoplankton has a relatively strong influence on carbon cycling during storm events. The effects of storms on pCO2 vary based on whether the water column is a two- or three-layer system and their timing during these two- and three-layer periods. Hurricane Arthur was a special case in that it impacted the shelf while it was in its three-layer phase. During this time, the entrained layer was stable as a result of the warm freshwater cap at the surface. This allowed phytoplankton to thrive at the boundary of the surface layer and the CIL, where there are more nutrients than in the upper mixed layer but still enough light to drive photosynthesis. When the storm arrived and perturbed this enclosed layer, it caused a sharp decrease in pCO2. It might appear evident that if there were changes in storm and wind characteristics, these would impact CO2 fluxes on the Scotian Shelf. However, so far no clear trends for changes in such characteristics are evident (e.g., Brickman et al., 2013).

The study presented in this work largely rests on data from moored autonomous instruments such as the CARIOCA buoy, which supply observational data with high temporal coverage. The complementing use of SeaHorse data has expanded the observations into the vertical dimension, which facilitates the consideration of water column properties and their influence on the surface water CO2 variability. In observational studies, a balance must always be found between temporal and spatial coverage, for example as discussed by Schiettecatte et al. (2007). It is clear that the use of moored instruments provides the high-temporal-resolution data needed to understand high-frequency variability. This strength of this study is at the expense of spatial coverage, and accordingly we cannot fully exclude lateral processes that might contribute to the variability of the CO2 system as observed by our instruments.

Data availability
Data availability.

Competing interests
Competing interests.

The authors declare that they have no conflict of interest.

Acknowledgements
Acknowledgements.

We are grateful to BIO staff for supporting mooring operations. This work was supported by MEOPAR and TOSST.

Edited by: S. W. A. Naqvi
Reviewed by: two anonymous referees

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