Articles | Volume 13, issue 9
https://doi.org/10.5194/bg-13-2803-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-13-2803-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Introduction to the project VAHINE: VAriability of vertical and tropHIc transfer of diazotroph derived N in the south wEst Pacific
Sophie Bonnet
CORRESPONDING AUTHOR
Aix Marseille Université, CNRS/INSU, Université
de Toulon, IRD, Mediterranean Institute of Oceanography (MIO) UM110 13288,
Marseille, France
Institut de Recherche pour le Développement, AMU/
CNRS/INSU, Université de Toulon, Mediterranean Institute of Oceanography
(MIO) UM110, 98848 Noumea, New Caledonia
Thierry Moutin
Aix Marseille Université, CNRS/INSU, Université
de Toulon, IRD, Mediterranean Institute of Oceanography (MIO) UM110 13288,
Marseille, France
Martine Rodier
Institut de Recherche pour le Développement,
Université de la Polynésie française, Institut Malardé,
Ifremer, UMR 241 Ecosystèmes Insulaires Océaniens (EIO), IRD Tahiti,
PB 529, 98713 Papeete, Tahiti, French Polynesia
Jean-Michel Grisoni
Observatoire Océanologique de Villefranche-sur-Mer,
UMS 829, Villefranche-sur-Mer, France
Francis Louis
Observatoire Océanologique de Villefranche-sur-Mer,
UMS 829, Villefranche-sur-Mer, France
Centre National de la Recherche Scientifique, UMR 7093,
Observatoire Océanologique de Villefranche-sur-Mer, Laboratoire
d'Océanographie de Villefranche-sur-Mer, Villefranche-sur-Mer,
France
Eric Folcher
Institut de Recherche pour le Développement, 98848 Noumea, New Caledonia
Bertrand Bourgeois
Institut de Recherche pour le Développement, 98848 Noumea, New Caledonia
Jean-Michel Boré
Institut de Recherche pour le Développement, 98848 Noumea, New Caledonia
Armelle Renaud
Institut de Recherche pour le Développement, 98848 Noumea, New Caledonia
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Siqi Wu, Moge Du, Xianhui Sean Wan, Corday Selden, Mar Benavides, Sophie Bonnet, Robert Hamersley, Carolin R. Löscher, Margaret R. Mulholland, Xiuli Yan, and Shuh-Ji Kao
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-104, https://doi.org/10.5194/bg-2021-104, 2021
Preprint withdrawn
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Nitrogen (N2) fixation is one of the most important nutrient sources to the ocean. Here, we report N2 fixation in the deep, dark ocean in the South China Sea via a highly sensitive new method and elaborate controls, showing the overlooked importance of N2 fixation in the deep ocean. By global data compilation, we also provide an easy measured basic parameter to estimate deep N2 fixation. Our study may help to expand the area limit of N2 fixation studies and better constrain global N2 fixation.
Sophie Bonnet, Mathieu Caffin, Hugo Berthelot, Olivier Grosso, Mar Benavides, Sandra Helias-Nunige, Cécile Guieu, Marcus Stenegren, and Rachel Ann Foster
Biogeosciences, 15, 4215–4232, https://doi.org/10.5194/bg-15-4215-2018, https://doi.org/10.5194/bg-15-4215-2018, 2018
Dina Spungin, Natalia Belkin, Rachel A. Foster, Marcus Stenegren, Andrea Caputo, Mireille Pujo-Pay, Nathalie Leblond, Cécile Dupouy, Sophie Bonnet, and Ilana Berman-Frank
Biogeosciences, 15, 3893–3908, https://doi.org/10.5194/bg-15-3893-2018, https://doi.org/10.5194/bg-15-3893-2018, 2018
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The way marine organisms die can determine the fate of organic matter (OM) in the ocean. We investigated whether a form of auto-induced programmed cell death (PCD) influenced phytoplankton mortality and fate of OM. Our results from high biomass blooms of the cyanobacterium Trichodesmium show evidence for PCD and high production of sticky carbon material termed transparent exopolymeric particles (TEP) that facilitates cellular aggregation and enhances the vertical flux of OM to depth.
Mathieu Caffin, Hugo Berthelot, Véronique Cornet-Barthaux, Aude Barani, and Sophie Bonnet
Biogeosciences, 15, 3795–3810, https://doi.org/10.5194/bg-15-3795-2018, https://doi.org/10.5194/bg-15-3795-2018, 2018
Mar Benavides, Katyanne M. Shoemaker, Pia H. Moisander, Jutta Niggemann, Thorsten Dittmar, Solange Duhamel, Olivier Grosso, Mireille Pujo-Pay, Sandra Hélias-Nunige, Alain Fumenia, and Sophie Bonnet
Biogeosciences, 15, 3107–3119, https://doi.org/10.5194/bg-15-3107-2018, https://doi.org/10.5194/bg-15-3107-2018, 2018
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We measured N2 fixation rates and identified diazotrophic phylotypes in the mesopelagic layer along a transect spanning from New Caledonia to French Polynesia. N2 fixation rates were low but consistently detected across all depths and stations. A distinct diazotrophic phylotype dominated at 650 dbar, coinciding with the oxygenated Subantarctic Mode Water (SAMW) and suggesting that the distribution of aphotic diazotroph communities is to some extent controlled by water mass structure.
Angela N. Knapp, Kelly M. McCabe, Olivier Grosso, Nathalie Leblond, Thierry Moutin, and Sophie Bonnet
Biogeosciences, 15, 2619–2628, https://doi.org/10.5194/bg-15-2619-2018, https://doi.org/10.5194/bg-15-2619-2018, 2018
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The spatial distribution of biological N2 fixation fluxes to the ocean remains poorly constrained. Here we use nitrogen isotope budgets to identify significant N2 fixation inputs to the western tropical South Pacific (WTSP), where N2 fixation supports > 50 % of export production at stations proximal to iron sources. The significant N2 fixation inputs in the WTSP may offset nitrogen loss in the oxygen-deficient zones of the eastern tropical South Pacific.
Mathieu Caffin, Thierry Moutin, Rachel Ann Foster, Pascale Bouruet-Aubertot, Andrea Michelangelo Doglioli, Hugo Berthelot, Cécile Guieu, Olivier Grosso, Sandra Helias-Nunige, Nathalie Leblond, Audrey Gimenez, Anne Alexandra Petrenko, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 15, 2565–2585, https://doi.org/10.5194/bg-15-2565-2018, https://doi.org/10.5194/bg-15-2565-2018, 2018
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We performed N budgets to assess the role of N2 fixation on production and export in the western tropical South Pacific Ocean. We deployed a combination of techniques including high-sensitivity measurements of N input and sediment traps deployment. We demonstrated that N2 fixation was the major source of new N before atmospheric deposition and upward nitrate fluxes. It contributed significantly to organic matter export, indicating a high efficiency of this region to export carbon.
Marcus Stenegren, Andrea Caputo, Carlo Berg, Sophie Bonnet, and Rachel A. Foster
Biogeosciences, 15, 1559–1578, https://doi.org/10.5194/bg-15-1559-2018, https://doi.org/10.5194/bg-15-1559-2018, 2018
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We successfully performed quantitative PCR at sea. The qPCR data were procured within 3 h and used in decisions on further sampling on site. We designed and applied a new primer and probe set for quantifying the UCYN-A1 host and observed discrepancies between host and symbiont, which contradict previous studies. Lastly, we observed a clear vertical separation between a subsurface group (UCYN-A with hosts) and a surface group (remaining diazotrophs), mainly separated by temperature.
Yangyang Lu, Zuozhu Wen, Dalin Shi, Mingming Chen, Yao Zhang, Sophie Bonnet, Yuhang Li, Jiwei Tian, and Shuh-Ji Kao
Biogeosciences, 15, 1–12, https://doi.org/10.5194/bg-15-1-2018, https://doi.org/10.5194/bg-15-1-2018, 2018
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We investigated the light response of field Trichodesmium N2 fixation and net dissolved nitrogen release behavior. Our results suggest that N2 fixation was a function of light intensity, and the light requirement of Trichodesmium nitrogen fixation was high relative to its photosynthetic light demand. Meanwhile, light is a crucial parameter driving the physiological state of Trichodesmium, which subsequently determined the C / N metabolism and net dissolved nitrogen release.
Thierry Moutin, Andrea Michelangelo Doglioli, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 14, 3207–3220, https://doi.org/10.5194/bg-14-3207-2017, https://doi.org/10.5194/bg-14-3207-2017, 2017
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The overall goal of OUTPACE was to obtain a successful representation of the interactions between planktonic organisms and the cycle of biogenic elements in the western tropical South Pacific Ocean across trophic and N2 fixation gradients. The international OUTPACE cruise took place between 18 February and 3 April 2015 aboard the RV L’Atalante and involved 60 scientists. The transect covered ~4 000 km from the western part of the Melanesian archipelago to the western boundary of the gyre.
Audrey Gimenez, Melika Baklouti, Sophie Bonnet, and Thierry Moutin
Biogeosciences, 13, 5103–5120, https://doi.org/10.5194/bg-13-5103-2016, https://doi.org/10.5194/bg-13-5103-2016, 2016
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In the context of the VAHINE mesocosm experiment in the Nouméa lagoon (New Caledonia), a 1-D vertical biogeochemical mechanistic model was used together with the in situ experiment to complement our comprehension of the planktonic ecosystem dynamics and the main biogeochemical carbon, nitrogen and phosphate fluxes. The model also showed the fate of fixed N2 by providing, over time, the proportion of diazotroph-derived nitrogen (DDN) in each compartment (mineral and organic) of the model.
Angela N. Knapp, Sarah E. Fawcett, Alfredo Martínez-Garcia, Nathalie Leblond, Thierry Moutin, and Sophie Bonnet
Biogeosciences, 13, 4645–4657, https://doi.org/10.5194/bg-13-4645-2016, https://doi.org/10.5194/bg-13-4645-2016, 2016
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The goal of this manuscript was to track the fate of newly fixed nitrogen (N) in large volume mesocosms in the coastal waters of New Caledonia. We used a N isotope ("δ15N") budget and found a shift in the δ15N of sinking particulate N over the 23-day experiment, indicating that nitrate supported export production at the beginning of the experiment, but that nitrogen fixation supported export at the end. We infer that nitrogen fixation supported export production by a release of dissolved N.
Sophie Bonnet, Melika Baklouti, Audrey Gimenez, Hugo Berthelot, and Ilana Berman-Frank
Biogeosciences, 13, 4461–4479, https://doi.org/10.5194/bg-13-4461-2016, https://doi.org/10.5194/bg-13-4461-2016, 2016
Dina Spungin, Ulrike Pfreundt, Hugo Berthelot, Sophie Bonnet, Dina AlRoumi, Frank Natale, Wolfgang R. Hess, Kay D. Bidle, and Ilana Berman-Frank
Biogeosciences, 13, 4187–4203, https://doi.org/10.5194/bg-13-4187-2016, https://doi.org/10.5194/bg-13-4187-2016, 2016
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The marine cyanobacterium Trichodesmium spp. forms massive blooms important to carbon and nitrogen cycling in the oceans that often collapse abruptly. We investigated a Trichodesmium bloom in the lagoon waters of New Caledonia to specifically elucidate the cellular processes mediating the bloom decline. We demonstrate physiological, biochemical, and genetic evidence for nutrient and oxidative stress that induced a genetically controlled programmed cell death (PCD) pathway leading to bloom demise.
Ulrike Pfreundt, Dina Spungin, Sophie Bonnet, Ilana Berman-Frank, and Wolfgang R. Hess
Biogeosciences, 13, 4135–4149, https://doi.org/10.5194/bg-13-4135-2016, https://doi.org/10.5194/bg-13-4135-2016, 2016
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The VAHINE experiment in the New Caledonia lagoon (SW Pacific) targeted the dynamics of nutrient pools and fluxes, N2 fixation, and the composition and productivity of the microbial communities. To connect this information to the actual activities of diverse microbial taxa, we present the analysis of the community-wide gene expression for 23 days. The results from this experiment provide insight into the microbial activities in a low-nutrient, low-chlorophyll ecosystem and within a mesocosm.
Hugo Berthelot, Sophie Bonnet, Olivier Grosso, Véronique Cornet, and Aude Barani
Biogeosciences, 13, 4005–4021, https://doi.org/10.5194/bg-13-4005-2016, https://doi.org/10.5194/bg-13-4005-2016, 2016
France Van Wambeke, Ulrike Pfreundt, Aude Barani, Hugo Berthelot, Thierry Moutin, Martine Rodier, Wolfgang R. Hess, and Sophie Bonnet
Biogeosciences, 13, 3187–3202, https://doi.org/10.5194/bg-13-3187-2016, https://doi.org/10.5194/bg-13-3187-2016, 2016
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The phytoplankton is at the base of the plankton food web in large parts of oceanic "deserts" such as the South Pacific Ocean, where nitrogen sources limit activity. Mesocosms were fertilized with phosphorus to stimulate diazotrophy (atmospheric N2 fixation). Mostly diazotroph-derived nitrogen fuelled the heterotrophic bacterial community through indirect processes generating dissolved organic matter and detritus, such as mortality, lysis and grazing of both diazotrophs and non-diazotrophs.
Brian P. V. Hunt, Sophie Bonnet, Hugo Berthelot, Brandon J. Conroy, Rachel A. Foster, and Marc Pagano
Biogeosciences, 13, 3131–3145, https://doi.org/10.5194/bg-13-3131-2016, https://doi.org/10.5194/bg-13-3131-2016, 2016
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Biological nitrogen (N) fixation is an important source of N for food webs in tropical and subtropical oceans. However, uptake pathways remain poorly understood. This study found that fixed N contributed a third of total zooplankton N in the New Caledonia lagoon. Fixed N reached the zooplankton through 1) direct grazing on N fixers and 2) grazing on phytoplankton that had taken up N released by fixers. We report the first record of direct zooplankton grazing on the unicellular N fixer UCYN-C.
Sophie Bonnet, Hugo Berthelot, Kendra Turk-Kubo, Sarah Fawcett, Eyal Rahav, Stéphane L'Helguen, and Ilana Berman-Frank
Biogeosciences, 13, 2653–2673, https://doi.org/10.5194/bg-13-2653-2016, https://doi.org/10.5194/bg-13-2653-2016, 2016
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N2 fixation rates were measured daily in ~ 50 m3 mesocosms deployed in New Caledonia to investigate the high-frequency dynamics of diazotrophy and the fate of diazotroph-derived nitrogen (DDN) oligotrophic ecosystems. ~ 10 % of UCYN-C from the water column were exported daily to the traps, representing as much as 22.4 ± 5.5 % of the total POC exported at the height of the UCYN-C bloom. 16 ± 6 % of the DDN was released to the dissolved pool and 21 ± 4 % was transferred to non-diazotrophic plankton.
Ulrike Pfreundt, France Van Wambeke, Mathieu Caffin, Sophie Bonnet, and Wolfgang R. Hess
Biogeosciences, 13, 2319–2337, https://doi.org/10.5194/bg-13-2319-2016, https://doi.org/10.5194/bg-13-2319-2016, 2016
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The Southwest Pacific has one of the highest N2 fixation rates in the global ocean, yet information is scarce on the bacterioplankton interrelationships. We detected high microbial diversity in the New Caledonia lagoon and inside a 50 000 L experimental enclosure of the same water mass over 3 weeks and give evidence for previously unknown niche partitioning. Phosphate fertilization promoted the growth of efficient N2 fixing cyanobacteria triggering the growth of most heterotrophic bacteria.
K. A. Turk-Kubo, I. E. Frank, M. E. Hogan, A. Desnues, S. Bonnet, and J. P. Zehr
Biogeosciences, 12, 7435–7452, https://doi.org/10.5194/bg-12-7435-2015, https://doi.org/10.5194/bg-12-7435-2015, 2015
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H. Berthelot, T. Moutin, S. L'Helguen, K. Leblanc, S. Hélias, O. Grosso, N. Leblond, B. Charrière, and S. Bonnet
Biogeosciences, 12, 4099–4112, https://doi.org/10.5194/bg-12-4099-2015, https://doi.org/10.5194/bg-12-4099-2015, 2015
C. Ridame, J. Dekaezemacker, C. Guieu, S. Bonnet, S. L'Helguen, and F. Malien
Biogeosciences, 11, 4783–4800, https://doi.org/10.5194/bg-11-4783-2014, https://doi.org/10.5194/bg-11-4783-2014, 2014
Oriane Bruyère, Romain Le Gendre, Mathilde Chauveau, Bertrand Bourgeois, David Varillon, John Butscher, Thomas Trophime, Yann Follin, Jérôme Aucan, Vetea Liao, and Serge Andréfouët
Earth Syst. Sci. Data, 15, 5553–5573, https://doi.org/10.5194/essd-15-5553-2023, https://doi.org/10.5194/essd-15-5553-2023, 2023
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During 2018–2022, four pearl farming Tuamotu atolls (French Polynesia) were studied with oceanographic instruments to measure lagoon hydrodynamics and ocean-lagoon water exchanges. The goal was to gain knowledge on the processes influencing the spat collection of the pearl oyster Pinctada margaritifera, the species used to produce black pearls. A worldwide unique oceanographic atoll data set is provided to address local pearl farming questions and other fundamental and applied investigations.
Frédéric Gazeau, Céline Ridame, France Van Wambeke, Samir Alliouane, Christian Stolpe, Jean-Olivier Irisson, Sophie Marro, Jean-Michel Grisoni, Guillaume De Liège, Sandra Nunige, Kahina Djaoudi, Elvira Pulido-Villena, Julie Dinasquet, Ingrid Obernosterer, Philippe Catala, and Cécile Guieu
Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, https://doi.org/10.5194/bg-18-5011-2021, 2021
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This paper shows that the impacts of Saharan dust deposition in different Mediterranean basins are as strong as those observed in coastal waters but differed substantially between the three tested stations, differences attributed to variable initial metabolic states. A stronger impact of warming and acidification on mineralization suggests a decreased capacity of Mediterranean surface communities to sequester CO2 following the deposition of atmospheric particles in the coming decades.
Siqi Wu, Moge Du, Xianhui Sean Wan, Corday Selden, Mar Benavides, Sophie Bonnet, Robert Hamersley, Carolin R. Löscher, Margaret R. Mulholland, Xiuli Yan, and Shuh-Ji Kao
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-104, https://doi.org/10.5194/bg-2021-104, 2021
Preprint withdrawn
Short summary
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Nitrogen (N2) fixation is one of the most important nutrient sources to the ocean. Here, we report N2 fixation in the deep, dark ocean in the South China Sea via a highly sensitive new method and elaborate controls, showing the overlooked importance of N2 fixation in the deep ocean. By global data compilation, we also provide an easy measured basic parameter to estimate deep N2 fixation. Our study may help to expand the area limit of N2 fixation studies and better constrain global N2 fixation.
Thierry Moutin
Biogeosciences, 16, 1673–1673, https://doi.org/10.5194/bg-16-1673-2019, https://doi.org/10.5194/bg-16-1673-2019, 2019
Pascale Bouruet-Aubertot, Yannis Cuypers, Andrea Doglioli, Mathieu Caffin, Christophe Yohia, Alain de Verneil, Anne Petrenko, Dominique Lefèvre, Hervé Le Goff, Gilles Rougier, Marc Picheral, and Thierry Moutin
Biogeosciences, 15, 7485–7504, https://doi.org/10.5194/bg-15-7485-2018, https://doi.org/10.5194/bg-15-7485-2018, 2018
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The OUTPACE cruise took place between New Caledonia and French Polynesia. The main purpose was to understand how micro-organisms can survive in a very poor environment. One main source of nutrients is at depth, below the euphotic layer where micro-organisms live. The purpose of the turbulence measurements was to determine to which extent turbulence may
upliftnutrients into the euphotic layer. The origin of the turbulence that was found contrasted along the transect was also determined.
Audrey Gimenez, Melika Baklouti, Thibaut Wagener, and Thierry Moutin
Biogeosciences, 15, 6573–6589, https://doi.org/10.5194/bg-15-6573-2018, https://doi.org/10.5194/bg-15-6573-2018, 2018
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During the OUTPACE cruise conducted in the oligotrophic to ultra-oligotrophic region of the western tropical South Pacific, two contrasted regions were sampled in terms of N2 fixation rates, primary production rates and nutrient availability. The aim of this work was to investigate the role of N2 fixation in the differences observed between the two contrasted areas by comparing two simulations only differing by the presence or not of N2 fixers using a 1-D biogeochemical–physical coupled model.
Cécile Dupouy, Robert Frouin, Marc Tedetti, Morgane Maillard, Martine Rodier, Fabien Lombard, Lionel Guidi, Marc Picheral, Jacques Neveux, Solange Duhamel, Bruno Charrière, and Richard Sempéré
Biogeosciences, 15, 5249–5269, https://doi.org/10.5194/bg-15-5249-2018, https://doi.org/10.5194/bg-15-5249-2018, 2018
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The marine diazotrophic Cyanobacterium Trichodesmium from the Underwater Vision Profiler 5 is concentrated in the first 50 m in the western tropical Pacific Ocean (18–22° S, 160° E–160° W). Its contribution to Tchl a and zeaxanthin is 60 % in the Melanesian archipelago and 30 % in the Fijian archipelago. Its impact on UV–VIS radiance is a peculiar signal in the green and yellow and possibly associated with backscattering or phycoerythrin fluorescence from Trichodesmium.
Guillaume Rousset, Florian De Boissieu, Christophe E. Menkes, Jérôme Lefèvre, Robert Frouin, Martine Rodier, Vincent Ridoux, Sophie Laran, Sophie Bonnet, and Cécile Dupouy
Biogeosciences, 15, 5203–5219, https://doi.org/10.5194/bg-15-5203-2018, https://doi.org/10.5194/bg-15-5203-2018, 2018
Thibaut Wagener, Nicolas Metzl, Mathieu Caffin, Jonathan Fin, Sandra Helias Nunige, Dominique Lefevre, Claire Lo Monaco, Gilles Rougier, and Thierry Moutin
Biogeosciences, 15, 5221–5236, https://doi.org/10.5194/bg-15-5221-2018, https://doi.org/10.5194/bg-15-5221-2018, 2018
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The western tropical South Pacific was sampled along a longitudinal 4000 km transect (OUTPACE cruise) for the measurement of carbonate parameters (total alkalinity and total inorganic carbon) between the Melanesian Archipelago and the western part of the South Pacific gyre. This paper reports this new dataset and derived properties. We also estimate anthropogenic carbon distribution in the water column using the TrOCA method.
Cyril Dutheil, Olivier Aumont, Thomas Gorguès, Anne Lorrain, Sophie Bonnet, Martine Rodier, Cécile Dupouy, Takuhei Shiozaki, and Christophe Menkes
Biogeosciences, 15, 4333–4352, https://doi.org/10.5194/bg-15-4333-2018, https://doi.org/10.5194/bg-15-4333-2018, 2018
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N2 fixation is recognized as one of the major sources of nitrogen in the ocean. Thus, N2 fixation sustains a significant part of the primary production (PP) by supplying the most common limiting nutrient for phytoplankton growth. From numerical simulations, the local maximums of Trichodesmium biomass in the Pacific are found around islands, explained by the iron fluxes from island sediments. We assessed that 15 % of the PP may be due to Trichodesmium in the low-nutrient, low-chlorophyll areas.
Sophie Bonnet, Mathieu Caffin, Hugo Berthelot, Olivier Grosso, Mar Benavides, Sandra Helias-Nunige, Cécile Guieu, Marcus Stenegren, and Rachel Ann Foster
Biogeosciences, 15, 4215–4232, https://doi.org/10.5194/bg-15-4215-2018, https://doi.org/10.5194/bg-15-4215-2018, 2018
Dina Spungin, Natalia Belkin, Rachel A. Foster, Marcus Stenegren, Andrea Caputo, Mireille Pujo-Pay, Nathalie Leblond, Cécile Dupouy, Sophie Bonnet, and Ilana Berman-Frank
Biogeosciences, 15, 3893–3908, https://doi.org/10.5194/bg-15-3893-2018, https://doi.org/10.5194/bg-15-3893-2018, 2018
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The way marine organisms die can determine the fate of organic matter (OM) in the ocean. We investigated whether a form of auto-induced programmed cell death (PCD) influenced phytoplankton mortality and fate of OM. Our results from high biomass blooms of the cyanobacterium Trichodesmium show evidence for PCD and high production of sticky carbon material termed transparent exopolymeric particles (TEP) that facilitates cellular aggregation and enhances the vertical flux of OM to depth.
Mathieu Caffin, Hugo Berthelot, Véronique Cornet-Barthaux, Aude Barani, and Sophie Bonnet
Biogeosciences, 15, 3795–3810, https://doi.org/10.5194/bg-15-3795-2018, https://doi.org/10.5194/bg-15-3795-2018, 2018
Mar Benavides, Katyanne M. Shoemaker, Pia H. Moisander, Jutta Niggemann, Thorsten Dittmar, Solange Duhamel, Olivier Grosso, Mireille Pujo-Pay, Sandra Hélias-Nunige, Alain Fumenia, and Sophie Bonnet
Biogeosciences, 15, 3107–3119, https://doi.org/10.5194/bg-15-3107-2018, https://doi.org/10.5194/bg-15-3107-2018, 2018
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We measured N2 fixation rates and identified diazotrophic phylotypes in the mesopelagic layer along a transect spanning from New Caledonia to French Polynesia. N2 fixation rates were low but consistently detected across all depths and stations. A distinct diazotrophic phylotype dominated at 650 dbar, coinciding with the oxygenated Subantarctic Mode Water (SAMW) and suggesting that the distribution of aphotic diazotroph communities is to some extent controlled by water mass structure.
Thierry Moutin, Thibaut Wagener, Mathieu Caffin, Alain Fumenia, Audrey Gimenez, Melika Baklouti, Pascale Bouruet-Aubertot, Mireille Pujo-Pay, Karine Leblanc, Dominique Lefevre, Sandra Helias Nunige, Nathalie Leblond, Olivier Grosso, and Alain de Verneil
Biogeosciences, 15, 2961–2989, https://doi.org/10.5194/bg-15-2961-2018, https://doi.org/10.5194/bg-15-2961-2018, 2018
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Surface waters of the western tropical South Pacific were sampled along a longitudinal 4000 km transect during the stratified period between the Melanesian Archipelago and the western part of the South Pacific gyre. We found a significant biological carbon pump sustained almost exclusively by N2 fixation and essentially controlled by phosphate availability in the iron-rich Melanesian Archipelago waters which appears to be a net sink for atmospheric CO2 while the gyre is in a quasi-steady state.
France Van Wambeke, Audrey Gimenez, Solange Duhamel, Cécile Dupouy, Dominique Lefevre, Mireille Pujo-Pay, and Thierry Moutin
Biogeosciences, 15, 2669–2689, https://doi.org/10.5194/bg-15-2669-2018, https://doi.org/10.5194/bg-15-2669-2018, 2018
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The western tropical South Pacific Ocean has recently been shown to be a hotspot for biological nitrogen fixation. In this study, we examined the horizontal and vertical distribution of heterotrophic prokaryotic production alongside photosynthetic rates, nitrogen fixation rates and phosphate turnover times across the western tropical South Pacific Ocean, in order to relate these fluxes to bottom–up controls (related to nitrogen, phosphate and labile C availability).
Angela N. Knapp, Kelly M. McCabe, Olivier Grosso, Nathalie Leblond, Thierry Moutin, and Sophie Bonnet
Biogeosciences, 15, 2619–2628, https://doi.org/10.5194/bg-15-2619-2018, https://doi.org/10.5194/bg-15-2619-2018, 2018
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The spatial distribution of biological N2 fixation fluxes to the ocean remains poorly constrained. Here we use nitrogen isotope budgets to identify significant N2 fixation inputs to the western tropical South Pacific (WTSP), where N2 fixation supports > 50 % of export production at stations proximal to iron sources. The significant N2 fixation inputs in the WTSP may offset nitrogen loss in the oxygen-deficient zones of the eastern tropical South Pacific.
Mathieu Caffin, Thierry Moutin, Rachel Ann Foster, Pascale Bouruet-Aubertot, Andrea Michelangelo Doglioli, Hugo Berthelot, Cécile Guieu, Olivier Grosso, Sandra Helias-Nunige, Nathalie Leblond, Audrey Gimenez, Anne Alexandra Petrenko, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 15, 2565–2585, https://doi.org/10.5194/bg-15-2565-2018, https://doi.org/10.5194/bg-15-2565-2018, 2018
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We performed N budgets to assess the role of N2 fixation on production and export in the western tropical South Pacific Ocean. We deployed a combination of techniques including high-sensitivity measurements of N input and sediment traps deployment. We demonstrated that N2 fixation was the major source of new N before atmospheric deposition and upward nitrate fluxes. It contributed significantly to organic matter export, indicating a high efficiency of this region to export carbon.
Alain de Verneil, Louise Rousselet, Andrea M. Doglioli, Anne A. Petrenko, Christophe Maes, Pascale Bouruet-Aubertot, and Thierry Moutin
Biogeosciences, 15, 2125–2147, https://doi.org/10.5194/bg-15-2125-2018, https://doi.org/10.5194/bg-15-2125-2018, 2018
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Oceanographic campaigns to measure biogeochemical processes popularly deploy drifters with onboard incubations to stay in a single body of water. Here, we aggregate physical data taken during such a cruise, OUTPACE, to independently test in a new approach whether the drifter really stayed in what can be considered a single biological or chemical environment. This study concludes that future campaigns would benefit from similar data collection and analysis to validate their sampling strategy.
Marcus Stenegren, Andrea Caputo, Carlo Berg, Sophie Bonnet, and Rachel A. Foster
Biogeosciences, 15, 1559–1578, https://doi.org/10.5194/bg-15-1559-2018, https://doi.org/10.5194/bg-15-1559-2018, 2018
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We successfully performed quantitative PCR at sea. The qPCR data were procured within 3 h and used in decisions on further sampling on site. We designed and applied a new primer and probe set for quantifying the UCYN-A1 host and observed discrepancies between host and symbiont, which contradict previous studies. Lastly, we observed a clear vertical separation between a subsurface group (UCYN-A with hosts) and a surface group (remaining diazotrophs), mainly separated by temperature.
Alain Fumenia, Thierry Moutin, Sophie Bonnet, Mar Benavides, Anne Petrenko, Sandra Helias Nunige, and Christophe Maes
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-557, https://doi.org/10.5194/bg-2017-557, 2018
Revised manuscript not accepted
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The Melanesian archipelago waters between 160° E and 170° W are characterized by a significant N2 fixation rates and an excess of particulate organic nitrogen compared to the canonical ratio of Redfield and a positive N*. We hypothesize that the southern branch of the subtropical gyre is probably the main vector of excess nitrogen transport in the thermocline waters showing an influence of nitrogen fixation occurring in the western tropical in a large part of the South Pacific.
Raphaëlle Sauzède, Elodie Martinez, Orens Pasqueron de Fommervault, Antoine Poteau, Alexandre Mignot, Christophe Maes, Hervé Claustre, Julia Uitz, Keitapu Maamaatuaiahutapu, Martine Rodier, Catherine Schmechtig, and Victoire Laurent
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-541, https://doi.org/10.5194/bg-2017-541, 2018
Revised manuscript not accepted
Yangyang Lu, Zuozhu Wen, Dalin Shi, Mingming Chen, Yao Zhang, Sophie Bonnet, Yuhang Li, Jiwei Tian, and Shuh-Ji Kao
Biogeosciences, 15, 1–12, https://doi.org/10.5194/bg-15-1-2018, https://doi.org/10.5194/bg-15-1-2018, 2018
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We investigated the light response of field Trichodesmium N2 fixation and net dissolved nitrogen release behavior. Our results suggest that N2 fixation was a function of light intensity, and the light requirement of Trichodesmium nitrogen fixation was high relative to its photosynthetic light demand. Meanwhile, light is a crucial parameter driving the physiological state of Trichodesmium, which subsequently determined the C / N metabolism and net dissolved nitrogen release.
Alain de Verneil, Louise Rousselet, Andrea M. Doglioli, Anne A. Petrenko, and Thierry Moutin
Biogeosciences, 14, 3471–3486, https://doi.org/10.5194/bg-14-3471-2017, https://doi.org/10.5194/bg-14-3471-2017, 2017
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A surface summer plankton bloom in the western tropical South Pacific was sampled during the Oligotrophy to UlTra-oligotrophy PACific Experiment (OUTPACE) cruise. We characterize the bloom's properties and the circulation responsible for its evolution. Nitrogen fixation helped sustain the bloom, and larger-scale flows, rather than the smaller ones, explain its movements. Future studies of blooms in this region can make use of these findings to track the horizontal export of plankton production.
Thierry Moutin, Andrea Michelangelo Doglioli, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 14, 3207–3220, https://doi.org/10.5194/bg-14-3207-2017, https://doi.org/10.5194/bg-14-3207-2017, 2017
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The overall goal of OUTPACE was to obtain a successful representation of the interactions between planktonic organisms and the cycle of biogenic elements in the western tropical South Pacific Ocean across trophic and N2 fixation gradients. The international OUTPACE cruise took place between 18 February and 3 April 2015 aboard the RV L’Atalante and involved 60 scientists. The transect covered ~4 000 km from the western part of the Melanesian archipelago to the western boundary of the gyre.
Karine Leblanc, Véronique Cornet, Mathieu Caffin, Martine Rodier, Anne Desnues, Hugo Berthelot, Kendra Turk-Kubo, and Jules Heliou
Biogeosciences, 13, 5205–5219, https://doi.org/10.5194/bg-13-5205-2016, https://doi.org/10.5194/bg-13-5205-2016, 2016
Audrey Gimenez, Melika Baklouti, Sophie Bonnet, and Thierry Moutin
Biogeosciences, 13, 5103–5120, https://doi.org/10.5194/bg-13-5103-2016, https://doi.org/10.5194/bg-13-5103-2016, 2016
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In the context of the VAHINE mesocosm experiment in the Nouméa lagoon (New Caledonia), a 1-D vertical biogeochemical mechanistic model was used together with the in situ experiment to complement our comprehension of the planktonic ecosystem dynamics and the main biogeochemical carbon, nitrogen and phosphate fluxes. The model also showed the fate of fixed N2 by providing, over time, the proportion of diazotroph-derived nitrogen (DDN) in each compartment (mineral and organic) of the model.
Angela N. Knapp, Sarah E. Fawcett, Alfredo Martínez-Garcia, Nathalie Leblond, Thierry Moutin, and Sophie Bonnet
Biogeosciences, 13, 4645–4657, https://doi.org/10.5194/bg-13-4645-2016, https://doi.org/10.5194/bg-13-4645-2016, 2016
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The goal of this manuscript was to track the fate of newly fixed nitrogen (N) in large volume mesocosms in the coastal waters of New Caledonia. We used a N isotope ("δ15N") budget and found a shift in the δ15N of sinking particulate N over the 23-day experiment, indicating that nitrate supported export production at the beginning of the experiment, but that nitrogen fixation supported export at the end. We infer that nitrogen fixation supported export production by a release of dissolved N.
Sophie Bonnet, Melika Baklouti, Audrey Gimenez, Hugo Berthelot, and Ilana Berman-Frank
Biogeosciences, 13, 4461–4479, https://doi.org/10.5194/bg-13-4461-2016, https://doi.org/10.5194/bg-13-4461-2016, 2016
Dina Spungin, Ulrike Pfreundt, Hugo Berthelot, Sophie Bonnet, Dina AlRoumi, Frank Natale, Wolfgang R. Hess, Kay D. Bidle, and Ilana Berman-Frank
Biogeosciences, 13, 4187–4203, https://doi.org/10.5194/bg-13-4187-2016, https://doi.org/10.5194/bg-13-4187-2016, 2016
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The marine cyanobacterium Trichodesmium spp. forms massive blooms important to carbon and nitrogen cycling in the oceans that often collapse abruptly. We investigated a Trichodesmium bloom in the lagoon waters of New Caledonia to specifically elucidate the cellular processes mediating the bloom decline. We demonstrate physiological, biochemical, and genetic evidence for nutrient and oxidative stress that induced a genetically controlled programmed cell death (PCD) pathway leading to bloom demise.
Ulrike Pfreundt, Dina Spungin, Sophie Bonnet, Ilana Berman-Frank, and Wolfgang R. Hess
Biogeosciences, 13, 4135–4149, https://doi.org/10.5194/bg-13-4135-2016, https://doi.org/10.5194/bg-13-4135-2016, 2016
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The VAHINE experiment in the New Caledonia lagoon (SW Pacific) targeted the dynamics of nutrient pools and fluxes, N2 fixation, and the composition and productivity of the microbial communities. To connect this information to the actual activities of diverse microbial taxa, we present the analysis of the community-wide gene expression for 23 days. The results from this experiment provide insight into the microbial activities in a low-nutrient, low-chlorophyll ecosystem and within a mesocosm.
Hugo Berthelot, Sophie Bonnet, Olivier Grosso, Véronique Cornet, and Aude Barani
Biogeosciences, 13, 4005–4021, https://doi.org/10.5194/bg-13-4005-2016, https://doi.org/10.5194/bg-13-4005-2016, 2016
Ilana Berman-Frank, Dina Spungin, Eyal Rahav, France Van Wambeke, Kendra Turk-Kubo, and Thierry Moutin
Biogeosciences, 13, 3793–3805, https://doi.org/10.5194/bg-13-3793-2016, https://doi.org/10.5194/bg-13-3793-2016, 2016
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In the marine environment, sticky sugar-containing gels, termed transparent exopolymeric particles (TEP), are produced from biological sources and physical and chemical processes. These compounds are essential vectors enhancing downward flow of organic matter and its storage at depth. Spatial and temporal dynamics of TEPs were followed for 23 days during the VAHINE mesocosm experiment that investigated the fate of nitrogen and carbon derived from organisms fixing atmospheric N2 (diazotrophs).
Marc Tedetti, Lauriane Marie, Rüdiger Röttgers, Martine Rodier, France Van Wambeke, Sandra Helias, Mathieu Caffin, Véronique Cornet-Barthaux, and Cécile Dupouy
Biogeosciences, 13, 3283–3303, https://doi.org/10.5194/bg-13-3283-2016, https://doi.org/10.5194/bg-13-3283-2016, 2016
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In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23-day mesocosm experiment conducted in the south-west Pacific at the mouth of the New Caledonian coral lagoon. We found that the dynamics of CDOM and particulate matter absorption were strongly coupled with those of cyanobacteria Synechococcus spp. and bacterial production.
France Van Wambeke, Ulrike Pfreundt, Aude Barani, Hugo Berthelot, Thierry Moutin, Martine Rodier, Wolfgang R. Hess, and Sophie Bonnet
Biogeosciences, 13, 3187–3202, https://doi.org/10.5194/bg-13-3187-2016, https://doi.org/10.5194/bg-13-3187-2016, 2016
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The phytoplankton is at the base of the plankton food web in large parts of oceanic "deserts" such as the South Pacific Ocean, where nitrogen sources limit activity. Mesocosms were fertilized with phosphorus to stimulate diazotrophy (atmospheric N2 fixation). Mostly diazotroph-derived nitrogen fuelled the heterotrophic bacterial community through indirect processes generating dissolved organic matter and detritus, such as mortality, lysis and grazing of both diazotrophs and non-diazotrophs.
Brian P. V. Hunt, Sophie Bonnet, Hugo Berthelot, Brandon J. Conroy, Rachel A. Foster, and Marc Pagano
Biogeosciences, 13, 3131–3145, https://doi.org/10.5194/bg-13-3131-2016, https://doi.org/10.5194/bg-13-3131-2016, 2016
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Biological nitrogen (N) fixation is an important source of N for food webs in tropical and subtropical oceans. However, uptake pathways remain poorly understood. This study found that fixed N contributed a third of total zooplankton N in the New Caledonia lagoon. Fixed N reached the zooplankton through 1) direct grazing on N fixers and 2) grazing on phytoplankton that had taken up N released by fixers. We report the first record of direct zooplankton grazing on the unicellular N fixer UCYN-C.
Sophie Bonnet, Hugo Berthelot, Kendra Turk-Kubo, Sarah Fawcett, Eyal Rahav, Stéphane L'Helguen, and Ilana Berman-Frank
Biogeosciences, 13, 2653–2673, https://doi.org/10.5194/bg-13-2653-2016, https://doi.org/10.5194/bg-13-2653-2016, 2016
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N2 fixation rates were measured daily in ~ 50 m3 mesocosms deployed in New Caledonia to investigate the high-frequency dynamics of diazotrophy and the fate of diazotroph-derived nitrogen (DDN) oligotrophic ecosystems. ~ 10 % of UCYN-C from the water column were exported daily to the traps, representing as much as 22.4 ± 5.5 % of the total POC exported at the height of the UCYN-C bloom. 16 ± 6 % of the DDN was released to the dissolved pool and 21 ± 4 % was transferred to non-diazotrophic plankton.
Ulrike Pfreundt, France Van Wambeke, Mathieu Caffin, Sophie Bonnet, and Wolfgang R. Hess
Biogeosciences, 13, 2319–2337, https://doi.org/10.5194/bg-13-2319-2016, https://doi.org/10.5194/bg-13-2319-2016, 2016
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The Southwest Pacific has one of the highest N2 fixation rates in the global ocean, yet information is scarce on the bacterioplankton interrelationships. We detected high microbial diversity in the New Caledonia lagoon and inside a 50 000 L experimental enclosure of the same water mass over 3 weeks and give evidence for previously unknown niche partitioning. Phosphate fertilization promoted the growth of efficient N2 fixing cyanobacteria triggering the growth of most heterotrophic bacteria.
K. A. Turk-Kubo, I. E. Frank, M. E. Hogan, A. Desnues, S. Bonnet, and J. P. Zehr
Biogeosciences, 12, 7435–7452, https://doi.org/10.5194/bg-12-7435-2015, https://doi.org/10.5194/bg-12-7435-2015, 2015
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-A shift from diatom-associated diazotrophs (DDAs) to unicellular cyanobacterial group C (UCYN-C) in response to DIP fertilization was captured in a large-scale mesocosm experiment in the Noumea lagoon (NL), a low-nutrient low-chlorophyll coastal environment. -First report of in situ net growth and mortality rates for unicellular diazotrophs UCYN-A2, and UCYN-C. -First quantitative abundance data for diazotrophs in NL indicate that DDAs and UCYN-A1/A2 may be important N2 fixers in this region.
A. Guyennon, M. Baklouti, F. Diaz, J. Palmieri, J. Beuvier, C. Lebaupin-Brossier, T. Arsouze, K. Béranger, J.-C. Dutay, and T. Moutin
Biogeosciences, 12, 7025–7046, https://doi.org/10.5194/bg-12-7025-2015, https://doi.org/10.5194/bg-12-7025-2015, 2015
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Dissolved organic carbon (DOC) has already been identified as a potentially significant source of carbon export in the Mediterranean Sea, though in situ export estimations are scarce. This work provides a thorough analysis at basin scale of carbon export with the coupled model NEMO-MED12/Eco3M-MED model. The seasonality and the processes of particulate and dissolved carbon production are also investigated. DOC export appears to be dominant in most regions, especially in the eastern basin.
H. Berthelot, T. Moutin, S. L'Helguen, K. Leblanc, S. Hélias, O. Grosso, N. Leblond, B. Charrière, and S. Bonnet
Biogeosciences, 12, 4099–4112, https://doi.org/10.5194/bg-12-4099-2015, https://doi.org/10.5194/bg-12-4099-2015, 2015
A. Talarmin, F. Van Wambeke, P. Lebaron, and T. Moutin
Biogeosciences, 12, 1237–1247, https://doi.org/10.5194/bg-12-1237-2015, https://doi.org/10.5194/bg-12-1237-2015, 2015
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Along a transect in the warm nutrient-depleted Mediterranean Sea, we found that microorganisms shared phosphate resources by using different uptake strategies. Heterotrophic prokaryotes dominated phosphate uptake in the upper layers while cyanobacteria dominated uptake fluxes around the deep chlorophyll maximum depth. Synechococcus seemed well equipped to respond to pulses of phosphate, whereas Prochlorococcus and heterotrophs were more adapted to very low concentrations.
C. Ridame, J. Dekaezemacker, C. Guieu, S. Bonnet, S. L'Helguen, and F. Malien
Biogeosciences, 11, 4783–4800, https://doi.org/10.5194/bg-11-4783-2014, https://doi.org/10.5194/bg-11-4783-2014, 2014
Related subject area
Biogeochemistry: Coastal Ocean
Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Unusual Hemiaulus Bloom Influences Ocean Productivity in Northeast U.S. Shelf Waters
Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
Influence of manganese cycling on alkalinity in the redox stratified water column of Chesapeake Bay
UAV approaches for improved mapping of vegetation cover and estimation of carbon storage of small saltmarshes: examples from Loch Fleet, northeast Scotland
Estuarine flocculation dynamics of organic carbon and metals from boreal acid sulfate soils
Drivers of particle sinking velocities in the Peruvian upwelling system
Marine anoxia initiates giant sulfur-bacteria mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland
Impacts and uncertainties of climate-induced changes in watershed inputs on estuarine hypoxia
Considerations for hypothetical carbon dioxide removal via alkalinity addition in the Amazon River watershed
Above- and Belowground Plant Mercury Dynamics in a Salt Marsh Estuary in Massachusetts, USA
High metabolism and periodic hypoxia associated with drifting macrophyte detritus in the shallow subtidal Baltic Sea
Oceanographic Processes Favoring Deoxygenation Inside Patagonian Fjords
Production and accumulation of reef framework by calcifying corals and macroalgae on a remote Indian Ocean cay
Zooplankton community succession and trophic links during a mesocosm experiment in the coastal upwelling off Callao Bay (Peru)
Temporal and spatial evolution of bottom-water hypoxia in the St Lawrence estuarine system
Significant nutrient consumption in the dark subsurface layer during a diatom bloom: a case study on Funka Bay, Hokkaido, Japan
Contrasts in dissolved, particulate, and sedimentary organic carbon from the Kolyma River to the East Siberian Shelf
Sediment quality assessment in an industrialized Greek coastal marine area (western Saronikos Gulf)
Limits and CO2 equilibration of near-coast alkalinity enhancement
Role of phosphorus in the seasonal deoxygenation of the East China Sea shelf
Interannual variability of the initiation of the phytoplankton growing period in two French coastal ecosystems
Iron “Ore” Nothing: Benthic iron fluxes from the oxygen-deficient Santa Barbara Basin enhance phytoplankton productivity in surface waters
Spatio-temporal distribution, photoreactivity and environmental control of dissolved organic matter in the sea-surface microlayer of the eastern marginal seas of China
Metabolic alkalinity release from large port facilities (Hamburg, Germany) and impact on coastal carbon storage
A Numerical reassessment of the Gulf of Mexico carbon system in connection with the Mississippi River and global ocean
Observed and projected global warming pressure on coastal hypoxia
Benthic alkalinity fluxes from coastal sediments of the Baltic and North seas: comparing approaches and identifying knowledge gaps
Investigating the effect of nickel concentration on phytoplankton growth to assess potential side-effects of ocean alkalinity enhancement
Unprecedented summer hypoxia in southern Cape Cod Bay: an ecological response to regional climate change?
Interannual variabilities, long-term trends, and regulating factors of low-oxygen conditions in the coastal waters off Hong Kong
Causes of the extensive hypoxia in the Gulf of Riga in 2018
Trawling effects on biogeochemical processes are mediated by fauna in high-energy biogenic-reef-inhabited coastal sediments
Drought recorded by Ba∕Ca in coastal benthic foraminifera
A nitrate budget of the Bohai Sea based on an isotope mass balance model
Suspended particulate matter drives the spatial segregation of nitrogen turnover along the hyper-turbid Ems estuary
Marine CO2 system variability along the northeast Pacific Inside Passage determined from an Alaskan ferry
Reviews and syntheses: Spatial and temporal patterns in seagrass metabolic fluxes
Mixed layer depth dominates over upwelling in regulating the seasonality of ecosystem functioning in the Peruvian upwelling system
Temporal dynamics of surface ocean carbonate chemistry in response to natural and simulated upwelling events during the 2017 coastal El Niño near Callao, Peru
Pelagic primary production in the coastal Mediterranean Sea: variability, trends, and contribution to basin-scale budgets
Contrasting patterns of carbon cycling and dissolved organic matter processing in two phytoplankton–bacteria communities
Biophysical controls on seasonal changes in the structure, growth, and grazing of the size-fractionated phytoplankton community in the northern South China Sea
Seasonal dispersal of fjord meltwaters as an important source of iron and manganese to coastal Antarctic phytoplankton
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
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Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
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We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
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Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
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We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
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Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
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This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy, Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-153, https://doi.org/10.5194/bg-2023-153, 2023
Revised manuscript accepted for BG
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The coastal ocean in northeastern USA provides many services, including fisheries and habitat for threatened species. In summer 2019, a bloom occurred of an unusual large phytoplankton, the diatom Hemiaulus with nitrogen fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes maybe become more prevalent as the ocean warms due to climate change.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
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Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
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The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
William Hiles, Lucy Catherine Miller, Craig Smeaton, and William Edward Newns Austin
EGUsphere, https://doi.org/10.5194/egusphere-2023-1185, https://doi.org/10.5194/egusphere-2023-1185, 2023
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
Joonas J. Virtasalo, Peter Österholm, and Eero Asmala
Biogeosciences, 20, 2883–2901, https://doi.org/10.5194/bg-20-2883-2023, https://doi.org/10.5194/bg-20-2883-2023, 2023
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We mixed acidic metal-rich river water from acid sulfate soils and seawater in the laboratory to study the flocculation of dissolved metals and organic matter in estuaries. Al and Fe flocculated already at a salinity of 0–2 to large organic flocs (>80 µm size). Precipitation of Al and Fe hydroxide flocculi (median size 11 µm) began when pH exceeded ca. 5.5. Mn transferred weakly to Mn hydroxides and Co to the flocs. Up to 50 % of Cu was associated with the flocs, irrespective of seawater mixing.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
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The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhoefer, Felix Janßen, Na Liu, Jonathan Tarn, Frank Kinnaman, David L. Valentine, and Tina Treude
EGUsphere, https://doi.org/10.5194/egusphere-2023-1198, https://doi.org/10.5194/egusphere-2023-1198, 2023
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Declining oxygen concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these oxygen depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining oxygen concentrations can help these mats grow, and how that growth affects the basin.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
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Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Linquan Mu, Jaime B. Palter, and Hongjie Wang
Biogeosciences, 20, 1963–1977, https://doi.org/10.5194/bg-20-1963-2023, https://doi.org/10.5194/bg-20-1963-2023, 2023
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Enhancing ocean alkalinity accelerates carbon dioxide removal from the atmosphere. We hypothetically added alkalinity to the Amazon River and examined the increment of the carbon uptake by the Amazon plume. We also investigated the minimum alkalinity addition in which this perturbation at the river mouth could be detected above the natural variability.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Y. Chen, and Daniel Obrist
EGUsphere, https://doi.org/10.5194/egusphere-2023-720, https://doi.org/10.5194/egusphere-2023-720, 2023
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems where atmospheric GEM is the main source. While belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Karl M. Attard, Anna Lyssenko, and Iván F. Rodil
Biogeosciences, 20, 1713–1724, https://doi.org/10.5194/bg-20-1713-2023, https://doi.org/10.5194/bg-20-1713-2023, 2023
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Aquatic plants produce a large amount of organic matter through photosynthesis that, following erosion, is deposited on the seafloor. In this study, we show that plant detritus can trigger low-oxygen conditions (hypoxia) in shallow coastal waters, making conditions challenging for most marine animals. We propose that the occurrence of hypoxia may be underestimated because measurements typically do not consider the region closest to the seafloor, where detritus accumulates.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
EGUsphere, https://doi.org/10.5194/egusphere-2023-706, https://doi.org/10.5194/egusphere-2023-706, 2023
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The Patagonian fjord is one world region where low-oxygen water and hypoxia conditions is observed. An in-situ data set was used to quantify the mechanism involved in the presence of low-oxygen water and hypoxic conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of equatorial subsurface water in the advection of the low-oxygen water and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
M. James McLaughlin, Cindy Bessey, Gary A. Kendrick, John Keesing, and Ylva S. Olsen
Biogeosciences, 20, 1011–1026, https://doi.org/10.5194/bg-20-1011-2023, https://doi.org/10.5194/bg-20-1011-2023, 2023
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Coral reefs face increasing pressures from environmental change at present. The coral reef framework is produced by corals and calcifying algae. The Kimberley region of Western Australia has escaped land-based anthropogenic impacts. Specimens of the dominant coral and algae were collected from Browse Island's reef platform and incubated in mesocosms to measure calcification and production patterns of oxygen. This study provides important data on reef building and climate-driven effects.
Patricia Ayón Dejo, Elda Luz Pinedo Arteaga, Anna Schukat, Jan Taucher, Rainer Kiko, Helena Hauss, Sabrina Dorschner, Wilhelm Hagen, Mariona Segura-Noguera, and Silke Lischka
Biogeosciences, 20, 945–969, https://doi.org/10.5194/bg-20-945-2023, https://doi.org/10.5194/bg-20-945-2023, 2023
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Ocean upwelling regions are highly productive. With ocean warming, severe changes in upwelling frequency and/or intensity and expansion of accompanying oxygen minimum zones are projected. In a field experiment off Peru, we investigated how different upwelling intensities affect the pelagic food web and found failed reproduction of dominant zooplankton. The changes projected could severely impact the reproductive success of zooplankton communities and the pelagic food web in upwelling regions.
Mathilde Jutras, Alfonso Mucci, Gwenaëlle Chaillou, William A. Nesbitt, and Douglas W. R. Wallace
Biogeosciences, 20, 839–849, https://doi.org/10.5194/bg-20-839-2023, https://doi.org/10.5194/bg-20-839-2023, 2023
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The deep waters of the lower St Lawrence Estuary and gulf have, in the last decades, experienced a strong decline in their oxygen concentration. Below 65 µmol L-1, the waters are said to be hypoxic, with dire consequences for marine life. We show that the extent of the hypoxic zone shows a seven-fold increase in the last 20 years, reaching 9400 km2 in 2021. After a stable period at ~ 65 µmol L⁻¹ from 1984 to 2019, the oxygen level also suddenly decreased to ~ 35 µmol L-1 in 2020.
Sachi Umezawa, Manami Tozawa, Yuichi Nosaka, Daiki Nomura, Hiroji Onishi, Hiroto Abe, Tetsuya Takatsu, and Atsushi Ooki
Biogeosciences, 20, 421–438, https://doi.org/10.5194/bg-20-421-2023, https://doi.org/10.5194/bg-20-421-2023, 2023
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We conducted repetitive observations in Funka Bay, Japan, during the spring bloom 2019. We found nutrient concentration decreases in the dark subsurface layer during the bloom. Incubation experiments confirmed that diatoms could consume nutrients at a substantial rate, even in darkness. We concluded that the nutrient reduction was mainly caused by nutrient consumption by diatoms in the dark.
Dirk Jong, Lisa Bröder, Tommaso Tesi, Kirsi H. Keskitalo, Nikita Zimov, Anna Davydova, Philip Pika, Negar Haghipour, Timothy I. Eglinton, and Jorien E. Vonk
Biogeosciences, 20, 271–294, https://doi.org/10.5194/bg-20-271-2023, https://doi.org/10.5194/bg-20-271-2023, 2023
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With this study, we want to highlight the importance of studying both land and ocean together, and water and sediment together, as these systems function as a continuum, and determine how organic carbon derived from permafrost is broken down and its effect on global warming. Although on the one hand it appears that organic carbon is removed from sediments along the pathway of transport from river to ocean, it also appears to remain relatively ‘fresh’, despite this removal and its very old age.
Georgia Filippi, Manos Dassenakis, Vasiliki Paraskevopoulou, and Konstantinos Lazogiannis
Biogeosciences, 20, 163–189, https://doi.org/10.5194/bg-20-163-2023, https://doi.org/10.5194/bg-20-163-2023, 2023
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The pollution of the western Saronikos Gulf from heavy metals has been examined through the study of marine sediment cores. It is a deep gulf (maximum depth 440 m) near Athens affected by industrial and volcanic activity. Eight cores were received from various stations and depths and analysed for their heavy metal content and geochemical characteristics. The results were evaluated by using statistical methods, environmental indicators and comparisons with old data.
Jing He and Michael D. Tyka
Biogeosciences, 20, 27–43, https://doi.org/10.5194/bg-20-27-2023, https://doi.org/10.5194/bg-20-27-2023, 2023
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Recently, ocean alkalinity enhancement (OAE) has gained interest as a scalable way to address the urgent need for negative CO2 emissions. In this paper we examine the capacity of different coastlines to tolerate alkalinity enhancement and the time scale of CO2 uptake following the addition of a given quantity of alkalinity. The results suggest that OAE has significant potential and identify specific favorable and unfavorable coastlines for its deployment.
Arnaud Laurent, Haiyan Zhang, and Katja Fennel
Biogeosciences, 19, 5893–5910, https://doi.org/10.5194/bg-19-5893-2022, https://doi.org/10.5194/bg-19-5893-2022, 2022
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The Changjiang is the main terrestrial source of nutrients to the East China Sea (ECS). Nutrient delivery to the ECS has been increasing since the 1960s, resulting in low oxygen (hypoxia) during phytoplankton decomposition in summer. River phosphorus (P) has increased less than nitrogen, and therefore, despite the large nutrient delivery, phytoplankton growth can be limited by the lack of P. Here, we investigate this link between P limitation, phytoplankton production/decomposition, and hypoxia.
Coline Poppeschi, Guillaume Charria, Anne Daniel, Romaric Verney, Peggy Rimmelin-Maury, Michaël Retho, Eric Goberville, Emilie Grossteffan, and Martin Plus
Biogeosciences, 19, 5667–5687, https://doi.org/10.5194/bg-19-5667-2022, https://doi.org/10.5194/bg-19-5667-2022, 2022
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This paper aims to understand interannual changes in the initiation of the phytoplankton growing period (IPGP) in the current context of global climate changes over the last 20 years. An important variability in the timing of the IPGP is observed with a trend towards a later IPGP during this last decade. The role and the impact of extreme events (cold spells, floods, and wind burst) on the IPGP is also detailed.
De’Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences Discuss., https://doi.org/10.5194/bg-2022-237, https://doi.org/10.5194/bg-2022-237, 2022
Revised manuscript accepted for BG
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The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low oxygen conditions in the basin.
Lin Yang, Jing Zhang, Anja Engel, and Gui-Peng Yang
Biogeosciences, 19, 5251–5268, https://doi.org/10.5194/bg-19-5251-2022, https://doi.org/10.5194/bg-19-5251-2022, 2022
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Enrichment factors of dissolved organic matter (DOM) in the eastern marginal seas of China exhibited a significant spatio-temporal variation. Photochemical and enrichment processes co-regulated DOM enrichment in the sea-surface microlayer (SML). Autochthonous DOM was more frequently enriched in the SML than terrestrial DOM. DOM in the sub-surface water exhibited higher aromaticity than that in the SML.
Mona Norbisrath, Johannes Pätsch, Kirstin Dähnke, Tina Sanders, Gesa Schulz, Justus E. E. van Beusekom, and Helmuth Thomas
Biogeosciences, 19, 5151–5165, https://doi.org/10.5194/bg-19-5151-2022, https://doi.org/10.5194/bg-19-5151-2022, 2022
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Total alkalinity (TA) regulates the oceanic storage capacity of atmospheric CO2. TA is also metabolically generated in estuaries and influences coastal carbon storage through its inflows. We used water samples and identified the Hamburg port area as the one with highest TA generation. Of the overall riverine TA load, 14 % is generated within the estuary. Using a biogeochemical model, we estimated potential effects on the coastal carbon storage under possible anthropogenic and climate changes.
Le Zhang and Z. George Xue
Biogeosciences, 19, 4589–4618, https://doi.org/10.5194/bg-19-4589-2022, https://doi.org/10.5194/bg-19-4589-2022, 2022
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We adopt a high-resolution carbon model for the Gulf of Mexico (GoM) and calculate the decadal trends of important carbon system variables in the GoM from 2001 to 2019. The GoM surface CO2 values experienced a steady increase over the past 2 decades, and the ocean surface pH is declining. Although carbonate saturation rates remain supersaturated with aragonite, they show a slightly decreasing trend. The northern GoM is a stronger carbon sink than we thought.
Michael M. Whitney
Biogeosciences, 19, 4479–4497, https://doi.org/10.5194/bg-19-4479-2022, https://doi.org/10.5194/bg-19-4479-2022, 2022
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Coastal hypoxia is a major environmental problem of increasing severity. The 21st-century projections analyzed indicate global coastal waters will warm and experience rapid declines in oxygen. The forecasted median coastal trends for increasing sea surface temperature and decreasing oxygen capacity are 48 % and 18 % faster than the rates observed over the last 4 decades. Existing hypoxic areas are expected to worsen, and new hypoxic areas likely will emerge under these warming-related pressures.
Bryce Van Dam, Nele Lehmann, Mary A. Zeller, Andreas Neumann, Daniel Pröfrock, Marko Lipka, Helmuth Thomas, and Michael Ernst Böttcher
Biogeosciences, 19, 3775–3789, https://doi.org/10.5194/bg-19-3775-2022, https://doi.org/10.5194/bg-19-3775-2022, 2022
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We quantified sediment–water exchange at shallow sites in the North and Baltic seas. We found that porewater irrigation rates in the former were approximately twice as high as previously estimated, likely driven by relatively high bioirrigative activity. In contrast, we found small net fluxes of alkalinity, ranging from −35 µmol m−2 h−1 (uptake) to 53 µmol m−2 h−1 (release). We attribute this to low net denitrification, carbonate mineral (re-)precipitation, and sulfide (re-)oxidation.
Jiaying Abby Guo, Robert Strzepek, Anusuya Willis, Aaron Ferderer, and Lennart Thomas Bach
Biogeosciences, 19, 3683–3697, https://doi.org/10.5194/bg-19-3683-2022, https://doi.org/10.5194/bg-19-3683-2022, 2022
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Ocean alkalinity enhancement is a CO2 removal method with significant potential, but it can lead to a perturbation of the ocean with trace metals such as nickel. This study tested the effect of increasing nickel concentrations on phytoplankton growth and photosynthesis. We found that the response to nickel varied across the 11 phytoplankton species tested here, but the majority were rather insensitive. We note, however, that responses may be different under other experimental conditions.
Malcolm E. Scully, W. Rockwell Geyer, David Borkman, Tracy L. Pugh, Amy Costa, and Owen C. Nichols
Biogeosciences, 19, 3523–3536, https://doi.org/10.5194/bg-19-3523-2022, https://doi.org/10.5194/bg-19-3523-2022, 2022
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For two consecutive summers, the bottom waters in southern Cape Cod Bay became severely depleted of dissolved oxygen. Low oxygen levels in bottom waters have never been reported in this area before, and this unprecedented occurrence is likely the result of a new algae species that recently began blooming during the late-summer months. We present data suggesting that blooms of this new species are the result of regional climate change including warmer waters and changes in summer winds.
Zheng Chen, Bin Wang, Chuang Xu, Zhongren Zhang, Shiyu Li, and Jiatang Hu
Biogeosciences, 19, 3469–3490, https://doi.org/10.5194/bg-19-3469-2022, https://doi.org/10.5194/bg-19-3469-2022, 2022
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Deterioration of low-oxygen conditions in the coastal waters off Hong Kong was revealed by monitoring data over two decades. The declining wind forcing and the increasing nutrient input contributed significantly to the areal expansion and intense deterioration of low-oxygen conditions. Also, the exacerbated eutrophication drove a shift in the dominant source of organic matter from terrestrial inputs to in situ primary production, which has probably led to an earlier onset of hypoxia in summer.
Stella-Theresa Stoicescu, Jaan Laanemets, Taavi Liblik, Māris Skudra, Oliver Samlas, Inga Lips, and Urmas Lips
Biogeosciences, 19, 2903–2920, https://doi.org/10.5194/bg-19-2903-2022, https://doi.org/10.5194/bg-19-2903-2022, 2022
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Coastal basins with high input of nutrients often suffer from oxygen deficiency. In summer 2018, the extent of oxygen depletion was exceptional in the Gulf of Riga. We analyzed observational data and found that extensive oxygen deficiency appeared since the water layer close to the seabed, where oxygen is consumed, was separated from the surface layer. The problem worsens if similar conditions restricting vertical transport of oxygen occur more frequently in the future.
Justin C. Tiano, Jochen Depestele, Gert Van Hoey, João Fernandes, Pieter van Rijswijk, and Karline Soetaert
Biogeosciences, 19, 2583–2598, https://doi.org/10.5194/bg-19-2583-2022, https://doi.org/10.5194/bg-19-2583-2022, 2022
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This study gives an assessment of bottom trawling on physical, chemical, and biological characteristics in a location known for its strong currents and variable habitats. Although trawl gears only removed the top 1 cm of the seabed surface, impacts on reef-building tubeworms significantly decreased carbon and nutrient cycling. Lighter trawls slightly reduced the impact on fauna and nutrients. Tubeworms were strongly linked to biogeochemical and faunal aspects before but not after trawling.
Inda Brinkmann, Christine Barras, Tom Jilbert, Tomas Næraa, K. Mareike Paul, Magali Schweizer, and Helena L. Filipsson
Biogeosciences, 19, 2523–2535, https://doi.org/10.5194/bg-19-2523-2022, https://doi.org/10.5194/bg-19-2523-2022, 2022
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The concentration of the trace metal barium (Ba) in coastal seawater is a function of continental input, such as riverine discharge. Our geochemical records of the severely hot and dry year 2018, and following wet year 2019, reveal that prolonged drought imprints with exceptionally low Ba concentrations in benthic foraminiferal calcium carbonates of coastal sediments. This highlights the potential of benthic Ba / Ca to trace past climate extremes and variability in coastal marine records.
Shichao Tian, Birgit Gaye, Jianhui Tang, Yongming Luo, Wenguo Li, Niko Lahajnar, Kirstin Dähnke, Tina Sanders, Tianqi Xiong, Weidong Zhai, and Kay-Christian Emeis
Biogeosciences, 19, 2397–2415, https://doi.org/10.5194/bg-19-2397-2022, https://doi.org/10.5194/bg-19-2397-2022, 2022
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We constrain the nitrogen budget and in particular the internal sources and sinks of nitrate in the Bohai Sea by using a mass-based and dual stable isotope approach based on δ15N and δ18O of nitrate. Based on available mass fluxes and isotope data an updated nitrogen budget is proposed. Compared to previous estimates, it is more complete and includes the impact of the interior cycle (nitrification) on the nitrate pool. The main external nitrogen sources are rivers contributing 19.2 %–25.6 %.
Gesa Schulz, Tina Sanders, Justus E. E. van Beusekom, Yoana G. Voynova, Andreas Schöl, and Kirstin Dähnke
Biogeosciences, 19, 2007–2024, https://doi.org/10.5194/bg-19-2007-2022, https://doi.org/10.5194/bg-19-2007-2022, 2022
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Estuaries can significantly alter nutrient loads before reaching coastal waters. Our study of the heavily managed Ems estuary (Northern Germany) reveals three zones of nitrogen turnover along the estuary with water-column denitrification in the most upstream hyper-turbid part, nitrate production in the middle reaches and mixing/nitrate uptake in the North Sea. Suspended particulate matter was the overarching control on nitrogen cycling in the hyper-turbid estuary.
Wiley Evans, Geoffrey T. Lebon, Christen D. Harrington, Yuichiro Takeshita, and Allison Bidlack
Biogeosciences, 19, 1277–1301, https://doi.org/10.5194/bg-19-1277-2022, https://doi.org/10.5194/bg-19-1277-2022, 2022
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Information on the marine carbon dioxide system along the northeast Pacific Inside Passage has been limited. To address this gap, we instrumented an Alaskan ferry in order to characterize the marine carbon dioxide system in this region. Data over a 2-year period were used to assess drivers of the observed variability, identify the timing of severe conditions, and assess the extent of contemporary ocean acidification as well as future levels consistent with a 1.5 °C warmer climate.
Melissa Ward, Tye L. Kindinger, Heidi K. Hirsh, Tessa M. Hill, Brittany M. Jellison, Sarah Lummis, Emily B. Rivest, George G. Waldbusser, Brian Gaylord, and Kristy J. Kroeker
Biogeosciences, 19, 689–699, https://doi.org/10.5194/bg-19-689-2022, https://doi.org/10.5194/bg-19-689-2022, 2022
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Here, we synthesize the results from 62 studies reporting in situ rates of seagrass metabolism to highlight spatial and temporal variability in oxygen fluxes and inform efforts to use seagrass to mitigate ocean acidification. Our analyses suggest seagrass meadows are generally autotrophic and variable in space and time, and the effects on seawater oxygen are relatively small in magnitude.
Tianfei Xue, Ivy Frenger, A. E. Friederike Prowe, Yonss Saranga José, and Andreas Oschlies
Biogeosciences, 19, 455–475, https://doi.org/10.5194/bg-19-455-2022, https://doi.org/10.5194/bg-19-455-2022, 2022
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The Peruvian system supports 10 % of the world's fishing yield. In the Peruvian system, wind and earth’s rotation bring cold, nutrient-rich water to the surface and allow phytoplankton to grow. But observations show that it grows worse at high upwelling. Using a model, we find that high upwelling happens when air mixes the water the most. Then phytoplankton is diluted and grows slowly due to low light and cool upwelled water. This study helps to estimate how it might change in a warming climate.
Shao-Min Chen, Ulf Riebesell, Kai G. Schulz, Elisabeth von der Esch, Eric P. Achterberg, and Lennart T. Bach
Biogeosciences, 19, 295–312, https://doi.org/10.5194/bg-19-295-2022, https://doi.org/10.5194/bg-19-295-2022, 2022
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Oxygen minimum zones in the ocean are characterized by enhanced carbon dioxide (CO2) levels and are being further acidified by increasing anthropogenic atmospheric CO2. Here we report CO2 system measurements in a mesocosm study offshore Peru during a rare coastal El Niño event to investigate how CO2 dynamics may respond to ongoing ocean deoxygenation. Our observations show that nitrogen limitation, productivity, and plankton community shift play an important role in driving the CO2 dynamics.
Paula Maria Salgado-Hernanz, Aurore Regaudie-de-Gioux, David Antoine, and Gotzon Basterretxea
Biogeosciences, 19, 47–69, https://doi.org/10.5194/bg-19-47-2022, https://doi.org/10.5194/bg-19-47-2022, 2022
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For the first time, this study presents the characteristics of primary production in coastal regions of the Mediterranean Sea based on satellite-borne observations for the period 2002–2016. The study concludes that there are significant spatial and temporal variations among different regions. Quantifying primary production is of special importance in the marine food web and in the sequestration of carbon dioxide from the atmosphere to the deep waters.
Samu Elovaara, Eeva Eronen-Rasimus, Eero Asmala, Tobias Tamelander, and Hermanni Kaartokallio
Biogeosciences, 18, 6589–6616, https://doi.org/10.5194/bg-18-6589-2021, https://doi.org/10.5194/bg-18-6589-2021, 2021
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Dissolved organic matter (DOM) is a significant carbon pool in the marine environment. The composition of the DOM pool, as well as its interaction with microbes, is complex, yet understanding it is important for understanding global carbon cycling. This study shows that two phytoplankton species have different effects on the composition of the DOM pool and, through the DOM they produce, on the ensuing microbial community. These communities in turn have different effects on DOM composition.
Yuan Dong, Qian P. Li, Zhengchao Wu, Yiping Shuai, Zijia Liu, Zaiming Ge, Weiwen Zhou, and Yinchao Chen
Biogeosciences, 18, 6423–6434, https://doi.org/10.5194/bg-18-6423-2021, https://doi.org/10.5194/bg-18-6423-2021, 2021
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Temporal change of plankton growth and grazing are less known in the coastal ocean, not to mention the relevant controlling mechanisms. Here, we performed monthly size-specific dilution experiments outside a eutrophic estuary over a 1-year cycle. Phytoplankton growth was correlated to nutrients and grazing mortality to total chlorophyll a. A selective grazing on small cells may be important for maintaining high abundance of large-chain-forming diatoms in this eutrophic system.
Kiefer O. Forsch, Lisa Hahn-Woernle, Robert M. Sherrell, Vincent J. Roccanova, Kaixuan Bu, David Burdige, Maria Vernet, and Katherine A. Barbeau
Biogeosciences, 18, 6349–6375, https://doi.org/10.5194/bg-18-6349-2021, https://doi.org/10.5194/bg-18-6349-2021, 2021
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We show that for an unperturbed cold western Antarctic Peninsula fjord, the seasonality of iron and manganese is linked to the dispersal of metal-rich meltwater sources. Geochemical measurements of trace metals in meltwaters, porewaters, and seawater, collected during two expeditions, showed a seasonal cycle of distinct sources. Finally, model results revealed that the dispersal of surface meltwater and meltwater plumes originating from under the glacier is sensitive to katabatic wind events.
Cited articles
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Short summary
e main goal of the VAHINE project was to study the fate of N2 fixation in the ocean. Three large-volume (~ 50 m3) mesocosms were deployed in a tropical oligotrophic ecosystem (the New Caledonia lagoon, south-eastern Pacific). This introductory paper describes the scientific objectives of the project in detail as well as the implementation plan: the mesocosm description and deployment, the selection of the study site, and the logistical and sampling strategy.
e main goal of the VAHINE project was to study the fate of N2 fixation in the ocean. Three...
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