Articles | Volume 12, issue 7
https://doi.org/10.5194/bg-12-2163-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-2163-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
13 Apr 2015
Research article |
| 13 Apr 2015
Distribution of PAHs and the PAH-degrading bacteria in the deep-sea sediments of the high-latitude Arctic Ocean
State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, Fujian, China
X. Bai
Life Science College, Xiamen University, Xiamen, 361005, Fujian, China
State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, Fujian, China
H. Sheng
Department of Environmental Health, School of Public Health and Tropical Medicine, Southern Medical University, Guangzhou, 510515, Guangdong, China
L. Jiao
Key Laboratory of Global Change and Marine-Atmospheric Chemistry, the Third Institute of Oceanography, State Oceanic Administration, Xiamen, 361005, Fujian, China
H. Zhou
Department of Environmental Health, School of Public Health and Tropical Medicine, Southern Medical University, Guangzhou, 510515, Guangdong, China
Z. Shao
CORRESPONDING AUTHOR
State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, SOA; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen 361005, Fujian, China
Related authors
Zhengchao Wu, Qian P. Li, Zaiming Ge, Bangqin Huang, and Chunming Dong
Biogeosciences, 18, 1049–1065, https://doi.org/10.5194/bg-18-1049-2021, https://doi.org/10.5194/bg-18-1049-2021, 2021
Short summary
Short summary
Seasonal hypoxia in the nearshore bottom waters frequently occurs in the Pearl River estuary. Aerobic respiration is the ultimate cause of local hypoxia. We found an elevated level of polyunsaturated aldehydes in the bottom water outside the estuary, which promoted the growth and metabolism of special groups of particle-attached bacteria and thus contributed to oxygen depletion in hypoxic waters. Our results may be important for understanding coastal hypoxia and its linkages to eutrophication.
Zhengchao Wu, Qian P. Li, Zaiming Ge, Bangqin Huang, and Chunming Dong
Biogeosciences, 18, 1049–1065, https://doi.org/10.5194/bg-18-1049-2021, https://doi.org/10.5194/bg-18-1049-2021, 2021
Short summary
Short summary
Seasonal hypoxia in the nearshore bottom waters frequently occurs in the Pearl River estuary. Aerobic respiration is the ultimate cause of local hypoxia. We found an elevated level of polyunsaturated aldehydes in the bottom water outside the estuary, which promoted the growth and metabolism of special groups of particle-attached bacteria and thus contributed to oxygen depletion in hypoxic waters. Our results may be important for understanding coastal hypoxia and its linkages to eutrophication.
Yong Wang, Tie Gang Li, Meng Ying Wang, Qi Liang Lai, Jiang Tao Li, Zhao Ming Gao, Zong Ze Shao, and Pei-Yuan Qian
Biogeosciences, 13, 6405–6417, https://doi.org/10.5194/bg-13-6405-2016, https://doi.org/10.5194/bg-13-6405-2016, 2016
Short summary
Short summary
Mild eruption of hydrothermal solutions on deep-sea benthic floor can produce anhydrite crystal layers, where microbes are trapped and preserved for a long period of time. These embedded original inhabitants will be biomarkers for the environment when the hydrothermal eruption occurred. This study discovered a thick anhydrite layer in a deep-sea brine pool in the Red Sea. Oil-degrading bacteria were revealed in the crystals with genomic and microscopic evidence.
Related subject area
Biodiversity and Ecosystem Function: Marine
Ecological divergence of a mesocosm in an eastern boundary upwelling system assessed with multi-marker environmental DNA metabarcoding
Unique benthic foraminiferal communities (stained) in diverse environments of sub-Antarctic fjords, South Georgia
Upwelled plankton community modulates surface bloom succession and nutrient availability in a natural plankton assemblage
First phytoplankton community assessment of the Kong Håkon VII Hav, Southern Ocean, during austral autumn
Early life stages of a Mediterranean coral are vulnerable to ocean warming and acidification
Mediterranean seagrasses as carbon sinks: methodological and regional differences
Contrasting vertical distributions of recent planktic foraminifera off Indonesia during the southeast monsoon: implications for paleoceanographic reconstructions
The onset of the spring phytoplankton bloom in the coastal North Sea supports the Disturbance Recovery Hypothesis
Species richness and functional attributes of fish assemblages across a large-scale salinity gradient in shallow coastal areas
Modeling the growth and sporulation dynamics of the macroalga Ulva in mixed-age populations in cultivation and the formation of green tides
Spatial changes in community composition and food web structure of mesozooplankton across the Adriatic basin (Mediterranean Sea)
Predicting mangrove forest dynamics across a soil salinity gradient using an individual-based vegetation model linked with plant hydraulics
Will daytime community calcification reflect reef accretion on future, degraded coral reefs?
Modeling polar marine ecosystem functions guided by bacterial physiological and taxonomic traits
Quantifying functional consequences of habitat degradation on a Caribbean coral reef
Enhanced chlorophyll-a concentration in the wake of Sable Island, eastern Canada, revealed by two decades of satellite observations: a response to grey seal population dynamics?
Population dynamics and reproduction strategies of planktonic foraminifera in the open ocean
The Bouraké semi-enclosed lagoon (New Caledonia) – a natural laboratory to study the lifelong adaptation of a coral reef ecosystem to extreme environmental conditions
Atypical, high-diversity assemblages of foraminifera in a mangrove estuary in northern Brazil
Permanent ectoplasmic structures in deep-sea Cibicides and Cibicidoides taxa – long-term observations at in situ pressure
Ideas and perspectives: Ushering the Indian Ocean into the UN Decade of Ocean Science for Sustainable Development (UNDOSSD) through marine ecosystem research and operational services – an early career's take
Persistent effects of sand extraction on habitats and associated benthic communities in the German Bight
Spatial patterns of ectoenzymatic kinetics in relation to biogeochemical properties in the Mediterranean Sea and the concentration of the fluorogenic substrate used
A 2-decade (1988–2009) record of diatom fluxes in the Mauritanian coastal upwelling: impact of low-frequency forcing and a two-step shift in the species composition
Review and syntheses: Impacts of turbidity flows on deep-sea benthic communities
Ideas and perspectives: When ocean acidification experiments are not the same, repeatability is not tested
The effect of the salinity, light regime and food source on carbon and nitrogen uptake in a benthic foraminifer
Changes in population depth distribution and oxygen stratification are involved in the current low condition of the eastern Baltic Sea cod (Gadus morhua)
Effects of spatial variability on the exposure of fish to hypoxia: a modeling analysis for the Gulf of Mexico
Plant genotype determines biomass response to flooding frequency in tidal wetlands
Factors controlling the competition between Phaeocystis and diatoms in the Southern Ocean and implications for carbon export fluxes
Characterization of particle-associated and free-living bacterial and archaeal communities along the water columns of the South China Sea
Adult life strategy affects distribution patterns in abyssal isopods – implications for conservation in Pacific nodule areas
Diversity and distribution of nitrogen fixation genes in the oxygen minimum zones of the world oceans
Structure and function of epipelagic mesozooplankton and their response to dust deposition events during the spring PEACETIME cruise in the Mediterranean Sea
Distribution of planktonic foraminifera in the subtropical South Atlantic: depth hierarchy of controlling factors
Technical note: Estimating light-use efficiency of benthic habitats using underwater O2 eddy covariance
Ocean acidification reduces growth and grazing impact of Antarctic heterotrophic nanoflagellates
Dynamics of environmental conditions during the decline of a Cymodocea nodosa meadow
Megafauna community assessment of polymetallic-nodule fields with cameras: platform and methodology comparison
A meta-analysis on environmental drivers of marine phytoplankton C : N : P
Spatial and temporal variability in the response of phytoplankton and prokaryotes to B-vitamin amendments in an upwelling system
Biogeography and community structure of abyssal scavenging Amphipoda (Crustacea) in the Pacific Ocean
Are seamounts refuge areas for fauna from polymetallic nodule fields?
Ocean deoxygenation and copepods: coping with oxygen minimum zone variability
Unexpected high abyssal ophiuroid diversity in polymetallic nodule fields of the northeast Pacific Ocean and implications for conservation
Population dynamics of modern planktonic foraminifera in the western Barents Sea
Foraminiferal community response to seasonal anoxia in Lake Grevelingen (the Netherlands)
Light availability modulates the effects of warming in a marine N2 fixer
SiR-actin-labelled granules in foraminifera: patterns, dynamics, and hypotheses
Markus A. Min, David M. Needham, Sebastian Sudek, Nathan Kobun Truelove, Kathleen J. Pitz, Gabriela M. Chavez, Camille Poirier, Bente Gardeler, Elisabeth von der Esch, Andrea Ludwig, Ulf Riebesell, Alexandra Z. Worden, and Francisco P. Chavez
Biogeosciences, 20, 1277–1298, https://doi.org/10.5194/bg-20-1277-2023, https://doi.org/10.5194/bg-20-1277-2023, 2023
Short summary
Short summary
Emerging molecular methods provide new ways of understanding how marine communities respond to changes in ocean conditions. Here, environmental DNA was used to track the temporal evolution of biological communities in the Peruvian coastal upwelling system and in an adjacent enclosure where upwelling was simulated. We found that the two communities quickly diverged, with the open ocean being one found during upwelling and the enclosure evolving to one found under stratified conditions.
Wojciech Majewski, Witold Szczuciński, and Andrew J. Gooday
Biogeosciences, 20, 523–544, https://doi.org/10.5194/bg-20-523-2023, https://doi.org/10.5194/bg-20-523-2023, 2023
Short summary
Short summary
We studied foraminifera living in the fjords of South Georgia, a sub-Antarctic island sensitive to climate change. As conditions in water and on the seafloor vary, different associations of these microorganisms dominate far inside, in the middle, and near fjord openings. Assemblages in inner and middle parts of fjords are specific to South Georgia, but they may become widespread with anticipated warming. These results are important for interpretating fossil records and monitoring future change.
Allanah Joy Paul, Lennart Thomas Bach, Javier Arístegui, Elisabeth von der Esch, Nauzet Hernández-Hernández, Jonna Piiparinen, Laura Ramajo, Kristian Spilling, and Ulf Riebesell
Biogeosciences, 19, 5911–5926, https://doi.org/10.5194/bg-19-5911-2022, https://doi.org/10.5194/bg-19-5911-2022, 2022
Short summary
Short summary
We investigated how different deep water chemistry and biology modulate the response of surface phytoplankton communities to upwelling in the Peruvian coastal zone. Our results show that the most influential drivers were the ratio of inorganic nutrients (N : P) and the microbial community present in upwelling source water. These led to unexpected and variable development in the phytoplankton assemblage that could not be predicted by the amount of inorganic nutrients alone.
Hanna M. Kauko, Philipp Assmy, Ilka Peeken, Magdalena Różańska-Pluta, Józef M. Wiktor, Gunnar Bratbak, Asmita Singh, Thomas J. Ryan-Keogh, and Sebastien Moreau
Biogeosciences, 19, 5449–5482, https://doi.org/10.5194/bg-19-5449-2022, https://doi.org/10.5194/bg-19-5449-2022, 2022
Short summary
Short summary
This article studies phytoplankton (microscopic
plantsin the ocean capable of photosynthesis) in Kong Håkon VII Hav in the Southern Ocean. Different species play different roles in the ecosystem, and it is therefore important to assess the species composition. We observed that phytoplankton blooms in this area are formed by large diatoms with strong silica armors, which can lead to high silica (and sometimes carbon) export to depth and be important prey for krill.
Chloe Carbonne, Steeve Comeau, Phoebe T. W. Chan, Keyla Plichon, Jean-Pierre Gattuso, and Núria Teixidó
Biogeosciences, 19, 4767–4777, https://doi.org/10.5194/bg-19-4767-2022, https://doi.org/10.5194/bg-19-4767-2022, 2022
Short summary
Short summary
For the first time, our study highlights the synergistic effects of a 9-month warming and acidification combined stress on the early life stages of a Mediterranean azooxanthellate coral, Astroides calycularis. Our results predict a decrease in dispersion, settlement, post-settlement linear extention, budding and survival under future global change and that larvae and recruits of A. calycularis are stages of interest for this Mediterranean coral resistance, resilience and conservation.
Iris E. Hendriks, Anna Escolano-Moltó, Susana Flecha, Raquel Vaquer-Sunyer, Marlene Wesselmann, and Núria Marbà
Biogeosciences, 19, 4619–4637, https://doi.org/10.5194/bg-19-4619-2022, https://doi.org/10.5194/bg-19-4619-2022, 2022
Short summary
Short summary
Seagrasses are marine plants with the capacity to act as carbon sinks due to their high primary productivity, using carbon for growth. This capacity can play a key role in climate change mitigation. We compiled and published data showing that two Mediterranean seagrass species have different metabolic rates, while the study method influences the rates of the measurements. Most communities act as carbon sinks, while the western basin might be more productive than the eastern Mediterranean.
Raúl Tapia, Sze Ling Ho, Hui-Yu Wang, Jeroen Groeneveld, and Mahyar Mohtadi
Biogeosciences, 19, 3185–3208, https://doi.org/10.5194/bg-19-3185-2022, https://doi.org/10.5194/bg-19-3185-2022, 2022
Short summary
Short summary
We report census counts of planktic foraminifera in depth-stratified plankton net samples off Indonesia. Our results show that the vertical distribution of foraminifera species routinely used in paleoceanographic reconstructions varies in hydrographically distinct regions, likely in response to food availability. Consequently, the thermal gradient based on mixed layer and thermocline dwellers also differs for these regions, suggesting potential implications for paleoceanographic reconstructions.
Ricardo González-Gil, Neil S. Banas, Eileen Bresnan, and Michael R. Heath
Biogeosciences, 19, 2417–2426, https://doi.org/10.5194/bg-19-2417-2022, https://doi.org/10.5194/bg-19-2417-2022, 2022
Short summary
Short summary
In oceanic waters, the accumulation of phytoplankton biomass in winter, when light still limits growth, is attributed to a decrease in grazing as the mixed layer deepens. However, in coastal areas, it is not clear whether winter biomass can accumulate without this deepening. Using 21 years of weekly data, we found that in the Scottish coastal North Sea, the seasonal increase in light availability triggers the accumulation of phytoplankton biomass in winter, when light limitation is strongest.
Birgit Koehler, Mårten Erlandsson, Martin Karlsson, and Lena Bergström
Biogeosciences, 19, 2295–2312, https://doi.org/10.5194/bg-19-2295-2022, https://doi.org/10.5194/bg-19-2295-2022, 2022
Short summary
Short summary
Understanding species richness patterns remains a challenge for biodiversity management. We estimated fish species richness over a coastal salinity gradient (3–32) with a method that allowed comparing data from various sources. Species richness was 3-fold higher at high vs. low salinity, and salinity influenced species’ habitat preference, mobility and feeding type. If climate change causes upper-layer freshening of the Baltic Sea, further shifts along the identified patterns may be expected.
Uri Obolski, Thomas Wichard, Alvaro Israel, Alexander Golberg, and Alexander Liberzon
Biogeosciences, 19, 2263–2271, https://doi.org/10.5194/bg-19-2263-2022, https://doi.org/10.5194/bg-19-2263-2022, 2022
Short summary
Short summary
The algal genus Ulva plays a major role in coastal ecosystems worldwide and is a promising prospect as an seagriculture crop. A substantial hindrance to cultivating Ulva arises from sudden sporulation, leading to biomass loss. This process is not yet well understood. Here, we characterize the dynamics of Ulva growth, considering the potential impact of sporulation inhibitors, using a mathematical model. Our findings are an essential step towards understanding the dynamics of Ulva growth.
Emanuela Fanelli, Samuele Menicucci, Sara Malavolti, Andrea De Felice, and Iole Leonori
Biogeosciences, 19, 1833–1851, https://doi.org/10.5194/bg-19-1833-2022, https://doi.org/10.5194/bg-19-1833-2022, 2022
Short summary
Short summary
Zooplankton play a key role in marine ecosystems, forming the base of the marine food web and a link between primary producers and higher-order consumers, such as fish. This aspect is crucial in the Adriatic basin, one of the most productive and overexploited areas of the Mediterranean Sea. A better understanding of community and food web structure and their response to water mass changes is essential under a global warming scenario, as zooplankton are sensitive to climate change.
Masaya Yoshikai, Takashi Nakamura, Rempei Suwa, Sahadev Sharma, Rene Rollon, Jun Yasuoka, Ryohei Egawa, and Kazuo Nadaoka
Biogeosciences, 19, 1813–1832, https://doi.org/10.5194/bg-19-1813-2022, https://doi.org/10.5194/bg-19-1813-2022, 2022
Short summary
Short summary
This study presents a new individual-based vegetation model to investigate salinity control on mangrove productivity. The model incorporates plant hydraulics and tree competition and predicts unique and complex patterns of mangrove forest structures that vary across soil salinity gradients. The presented model does not hold an empirical expression of salinity influence on productivity and thus may provide a better understanding of mangrove forest dynamics in future climate change.
Coulson A. Lantz, William Leggat, Jessica L. Bergman, Alexander Fordyce, Charlotte Page, Thomas Mesaglio, and Tracy D. Ainsworth
Biogeosciences, 19, 891–906, https://doi.org/10.5194/bg-19-891-2022, https://doi.org/10.5194/bg-19-891-2022, 2022
Short summary
Short summary
Coral bleaching events continue to drive the degradation of coral reefs worldwide. In this study we measured rates of daytime coral reef community calcification and photosynthesis during a reef-wide bleaching event. Despite a measured decline in coral health across several taxa, there was no change in overall daytime community calcification and photosynthesis. These findings highlight potential limitations of these community-level metrics to reflect actual changes in coral health.
Hyewon Heather Kim, Jeff S. Bowman, Ya-Wei Luo, Hugh W. Ducklow, Oscar M. Schofield, Deborah K. Steinberg, and Scott C. Doney
Biogeosciences, 19, 117–136, https://doi.org/10.5194/bg-19-117-2022, https://doi.org/10.5194/bg-19-117-2022, 2022
Short summary
Short summary
Heterotrophic marine bacteria are tiny organisms responsible for taking up organic matter in the ocean. Using a modeling approach, this study shows that characteristics (taxonomy and physiology) of bacteria are associated with a subset of ecological processes in the coastal West Antarctic Peninsula region, a system susceptible to global climate change. This study also suggests that bacteria will become more active, in particular large-sized cells, in response to changing climates in the region.
Alice E. Webb, Didier M. de Bakker, Karline Soetaert, Tamara da Costa, Steven M. A. C. van Heuven, Fleur C. van Duyl, Gert-Jan Reichart, and Lennart J. de Nooijer
Biogeosciences, 18, 6501–6516, https://doi.org/10.5194/bg-18-6501-2021, https://doi.org/10.5194/bg-18-6501-2021, 2021
Short summary
Short summary
The biogeochemical behaviour of shallow reef communities is quantified to better understand the impact of habitat degradation and species composition shifts on reef functioning. The reef communities investigated barely support reef functions that are usually ascribed to conventional coral reefs, and the overall biogeochemical behaviour is found to be similar regardless of substrate type. This suggests a decrease in functional diversity which may therefore limit services provided by this reef.
Emmanuel Devred, Andrea Hilborn, and Cornelia Elizabeth den Heyer
Biogeosciences, 18, 6115–6132, https://doi.org/10.5194/bg-18-6115-2021, https://doi.org/10.5194/bg-18-6115-2021, 2021
Short summary
Short summary
A theoretical model of grey seal seasonal abundance on Sable Island (SI) coupled with chlorophyll-a concentration [chl-a] measured by satellite revealed the impact of seal nitrogen fertilization on the surrounding waters of SI, Canada. The increase in seals from about 100 000 in 2003 to about 360 000 in 2018 during the breeding season is consistent with an increase in [chl-a] leeward of SI. The increase in seal abundance explains 8 % of the [chl-a] increase.
Julie Meilland, Michael Siccha, Maike Kaffenberger, Jelle Bijma, and Michal Kucera
Biogeosciences, 18, 5789–5809, https://doi.org/10.5194/bg-18-5789-2021, https://doi.org/10.5194/bg-18-5789-2021, 2021
Short summary
Short summary
Planktonic foraminifera population dynamics has long been assumed to be controlled by synchronous reproduction and ontogenetic vertical migration (OVM). Due to contradictory observations, this concept became controversial. We here test it in the Atlantic ocean for four species of foraminifera representing the main clades. Our observations support the existence of synchronised reproduction and OVM but show that more than half of the population does not follow the canonical trajectory.
Federica Maggioni, Mireille Pujo-Pay, Jérome Aucan, Carlo Cerrano, Barbara Calcinai, Claude Payri, Francesca Benzoni, Yves Letourneur, and Riccardo Rodolfo-Metalpa
Biogeosciences, 18, 5117–5140, https://doi.org/10.5194/bg-18-5117-2021, https://doi.org/10.5194/bg-18-5117-2021, 2021
Short summary
Short summary
Based on current experimental evidence, climate change will affect up to 90 % of coral reefs worldwide. The originality of this study arises from our recent discovery of an exceptional study site where environmental conditions (temperature, pH, and oxygen) are even worse than those forecasted for the future.
While these conditions are generally recognized as unfavorable for marine life, we found a rich and abundant coral reef thriving under such extreme environmental conditions.
Nisan Sariaslan and Martin R. Langer
Biogeosciences, 18, 4073–4090, https://doi.org/10.5194/bg-18-4073-2021, https://doi.org/10.5194/bg-18-4073-2021, 2021
Short summary
Short summary
Analyses of foraminiferal assemblages from the Mamanguape mangrove estuary (northern Brazil) revealed highly diverse, species-rich, and structurally complex biotas. The atypical fauna resembles shallow-water offshore assemblages and are interpreted to be the result of highly saline ocean waters penetrating deep into the estuary. The findings contrast with previous studies, have implications for the fossil record, and provide novel perspectives for reconstructing mangrove environments.
Jutta E. Wollenburg, Jelle Bijma, Charlotte Cremer, Ulf Bickmeyer, and Zora Mila Colomba Zittier
Biogeosciences, 18, 3903–3915, https://doi.org/10.5194/bg-18-3903-2021, https://doi.org/10.5194/bg-18-3903-2021, 2021
Short summary
Short summary
Cultured at in situ high-pressure conditions Cibicides and Cibicidoides taxa develop lasting ectoplasmic structures that cannot be retracted or resorbed. An ectoplasmic envelope surrounds their test and may protect the shell, e.g. versus carbonate aggressive bottom water conditions. Ectoplasmic roots likely anchor the specimens in areas of strong bottom water currents, trees enable them to elevate themselves above ground, and twigs stabilize and guide the retractable pseudopodial network.
Kumar Nimit
Biogeosciences, 18, 3631–3635, https://doi.org/10.5194/bg-18-3631-2021, https://doi.org/10.5194/bg-18-3631-2021, 2021
Short summary
Short summary
The Indian Ocean Rim hosts many of the underdeveloped and emerging economies that depend on ocean resources for the livelihood of millions. Operational ocean information services cater to the requirements of resource managers and end-users to efficiently harness resources, mitigate threats and ensure safety. This paper outlines existing tools and explores the ongoing research that has the potential to convert the findings into operational services in the near- to midterm.
Finn Mielck, Rune Michaelis, H. Christian Hass, Sarah Hertel, Caroline Ganal, and Werner Armonies
Biogeosciences, 18, 3565–3577, https://doi.org/10.5194/bg-18-3565-2021, https://doi.org/10.5194/bg-18-3565-2021, 2021
Short summary
Short summary
Marine sand mining is becoming more and more important to nourish fragile coastlines that face global change. We investigated the largest sand extraction site in the German Bight. The study reveals that after more than 35 years of mining, the excavation pits are still detectable on the seafloor while the sediment composition has largely changed. The organic communities living in and on the seafloor were strongly decimated, and no recovery is observable towards previous conditions.
France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
Short summary
Short summary
Michaelis–Menten kinetics were determined for alkaline phosphatase, aminopeptidase and β-glucosidase in the Mediterranean Sea. Although the ectoenzymatic-hydrolysis contribution to heterotrophic prokaryotic needs was high in terms of N, it was low in terms of C. This study points out the biases in interpretation of the relative differences in activities among the three tested enzymes in regard to the choice of added concentrations of fluorogenic substrates.
Oscar E. Romero, Simon Ramondenc, and Gerhard Fischer
Biogeosciences, 18, 1873–1891, https://doi.org/10.5194/bg-18-1873-2021, https://doi.org/10.5194/bg-18-1873-2021, 2021
Short summary
Short summary
Upwelling intensity along NW Africa varies on the interannual to decadal timescale. Understanding its changes is key for the prediction of future changes of CO2 sequestration in the northeastern Atlantic. Based on a multiyear (1988–2009) sediment trap experiment at the site CBmeso, fluxes and the species composition of the diatom assemblage are presented. Our data help in establishing the scientific basis for forecasting and modeling future states of this ecosystem and its decadal changes.
Katharine T. Bigham, Ashley A. Rowden, Daniel Leduc, and David A. Bowden
Biogeosciences, 18, 1893–1908, https://doi.org/10.5194/bg-18-1893-2021, https://doi.org/10.5194/bg-18-1893-2021, 2021
Short summary
Short summary
Turbidity flows – underwater avalanches – are large-scale physical disturbances believed to have profound impacts on productivity and diversity of benthic communities in the deep sea. We reviewed published studies and found that current evidence for changes in productivity is ambiguous at best, but the influence on regional and local diversity is clearer. We suggest study design criteria that may lead to a better understanding of large-scale disturbance effects on deep-sea benthos.
Phillip Williamson, Hans-Otto Pörtner, Steve Widdicombe, and Jean-Pierre Gattuso
Biogeosciences, 18, 1787–1792, https://doi.org/10.5194/bg-18-1787-2021, https://doi.org/10.5194/bg-18-1787-2021, 2021
Short summary
Short summary
The reliability of ocean acidification research was challenged in early 2020 when a high-profile paper failed to corroborate previously observed impacts of high CO2 on the behaviour of coral reef fish. We now know the reason why: the
replicatedstudies differed in many ways. Open-minded and collaborative assessment of all research results, both negative and positive, remains the best way to develop process-based understanding of the impacts of ocean acidification on marine organisms.
Michael Lintner, Bianca Lintner, Wolfgang Wanek, Nina Keul, and Petra Heinz
Biogeosciences, 18, 1395–1406, https://doi.org/10.5194/bg-18-1395-2021, https://doi.org/10.5194/bg-18-1395-2021, 2021
Short summary
Short summary
Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changes in salinity immediately influence the foraminiferal activity. Also the light regime has a significant impact on carbon or nitrogen processing in foraminifera which contain no kleptoplasts.
Michele Casini, Martin Hansson, Alessandro Orio, and Karin Limburg
Biogeosciences, 18, 1321–1331, https://doi.org/10.5194/bg-18-1321-2021, https://doi.org/10.5194/bg-18-1321-2021, 2021
Short summary
Short summary
In the past 20 years the condition of the eastern Baltic cod has dropped, with large implications for the fishery. Our results show that simultaneously the cod population has moved deeper while low-oxygenated waters detrimental for cod growth have become shallower. Cod have thus dwelled more in detrimental waters, explaining the drop in its condition. This study, using long-term fish and hydrological monitoring data, evidences the impact of deoxygenation on fish biology and fishing.
Elizabeth D. LaBone, Kenneth A. Rose, Dubravko Justic, Haosheng Huang, and Lixia Wang
Biogeosciences, 18, 487–507, https://doi.org/10.5194/bg-18-487-2021, https://doi.org/10.5194/bg-18-487-2021, 2021
Short summary
Short summary
The hypoxic zone is an area of low dissolved oxygen (DO) in the Gulf of Mexico. Fish can be killed by exposure to hypoxia and can be negatively impacted by exposure to low, nonlethal DO concentrations (sublethal DO). We found that high sublethal area resulted in higher exposure and DO variability had a small effect on exposure. There was a large variation in exposure among individuals, which when combined with spatial variability of DO, can result in an underestimation of exposure when averaged.
Svenja Reents, Peter Mueller, Hao Tang, Kai Jensen, and Stefanie Nolte
Biogeosciences, 18, 403–411, https://doi.org/10.5194/bg-18-403-2021, https://doi.org/10.5194/bg-18-403-2021, 2021
Short summary
Short summary
By conducting a flooding experiment with two genotypes of the salt-marsh grass Elymus athericus, we show considerable differences in biomass response to flooding within the same species. As biomass production plays a major role in sedimentation processes and thereby salt-marsh accretion, we emphasise the importance of taking intraspecific differences into account when evaluating ecosystem resilience to accelerated sea level rise.
Cara Nissen and Meike Vogt
Biogeosciences, 18, 251–283, https://doi.org/10.5194/bg-18-251-2021, https://doi.org/10.5194/bg-18-251-2021, 2021
Short summary
Short summary
Using a regional Southern Ocean ecosystem model, we find that the relative importance of Phaeocystis and diatoms at high latitudes is controlled by iron and temperature variability, with light levels controlling the seasonal succession in coastal areas. Yet, biomass losses via aggregation and grazing matter as well. We show that the seasonal succession of Phaeocystis and diatoms impacts the seasonality of carbon export fluxes with ramifications for nutrient cycling and food web dynamics.
Jiangtao Li, Lingyuan Gu, Shijie Bai, Jie Wang, Lei Su, Bingbing Wei, Li Zhang, and Jiasong Fang
Biogeosciences, 18, 113–133, https://doi.org/10.5194/bg-18-113-2021, https://doi.org/10.5194/bg-18-113-2021, 2021
Short summary
Short summary
Few studies have focused on the particle-attached (PA) and free-living (FL) microbes of the deep ocean. Here we determined PA and FL microbial communities along depth profiles of the SCS. PA and FL fractions accommodated divergent microbial compositions, and most of them are potentially generalists with PA and FL dual lifestyles. A potential vertical connectivity between surface-specific microbes and those in the deep ocean was indicated, likely through microbial attachment to sinking particles.
Saskia Brix, Karen J. Osborn, Stefanie Kaiser, Sarit B. Truskey, Sarah M. Schnurr, Nils Brenke, Marina Malyutina, and Pedro Martinez Arbizu
Biogeosciences, 17, 6163–6184, https://doi.org/10.5194/bg-17-6163-2020, https://doi.org/10.5194/bg-17-6163-2020, 2020
Short summary
Short summary
The Clarion–Clipperton Fracture Zone (CCZ) located in the Pacific is commercially the most important area of proposed manganese nodule mining. Extraction of this will influence the life and distribution of small deep-sea invertebrates like peracarid crustaceans, of which >90 % are undescribed species new to science. We are doing a species delimitation approach as baseline for an ecological interpretation of species distribution and discuss the results in light of future deep-sea conservation.
Amal Jayakumar and Bess B. Ward
Biogeosciences, 17, 5953–5966, https://doi.org/10.5194/bg-17-5953-2020, https://doi.org/10.5194/bg-17-5953-2020, 2020
Short summary
Short summary
Diversity and community composition of nitrogen-fixing microbes in the three main oxygen minimum zones of the world ocean were investigated using nifH clone libraries. Representatives of three main clusters of nifH genes were detected. Sequences were most diverse in the surface waters. The most abundant OTUs were affiliated with Alpha- and Gammaproteobacteria. The sequences were biogeographically distinct and the dominance of a few OTUs was commonly observed in OMZs in this (and other) studies.
Guillermo Feliú, Marc Pagano, Pamela Hidalgo, and François Carlotti
Biogeosciences, 17, 5417–5441, https://doi.org/10.5194/bg-17-5417-2020, https://doi.org/10.5194/bg-17-5417-2020, 2020
Short summary
Short summary
The impact of Saharan dust deposition events on the Mediterranean Sea ecosystem was studied during a basin-scale survey (PEACETIME cruise, May–June 2017). Short-term responses of the zooplankton community were observed after episodic dust deposition events, highlighting the impact of these events on productivity up to the zooplankton level in the poorly fertilized pelagic ecosystems of the southern Mediterranean Sea.
Douglas Lessa, Raphaël Morard, Lukas Jonkers, Igor M. Venancio, Runa Reuter, Adrian Baumeister, Ana Luiza Albuquerque, and Michal Kucera
Biogeosciences, 17, 4313–4342, https://doi.org/10.5194/bg-17-4313-2020, https://doi.org/10.5194/bg-17-4313-2020, 2020
Short summary
Short summary
We observed that living planktonic foraminifera had distinct vertically distributed communities across the Subtropical South Atlantic. In addition, a hierarchic alternation of environmental parameters was measured to control the distribution of planktonic foraminifer's species depending on the water depth. This implies that not only temperature but also productivity and subsurface processes are signed in fossil assemblages, which could be used to perform paleoceanographic reconstructions.
Karl M. Attard and Ronnie N. Glud
Biogeosciences, 17, 4343–4353, https://doi.org/10.5194/bg-17-4343-2020, https://doi.org/10.5194/bg-17-4343-2020, 2020
Short summary
Short summary
Light-use efficiency defines the ability of primary producers to convert sunlight energy to primary production. This report provides a framework to compute hourly and daily light-use efficiency using underwater eddy covariance, a recent technological development that produces habitat-scale rates of primary production for many different habitat types. The approach, tested on measured flux data, provides a useful means to compare habitat productivity across time and space.
Stacy Deppeler, Kai G. Schulz, Alyce Hancock, Penelope Pascoe, John McKinlay, and Andrew Davidson
Biogeosciences, 17, 4153–4171, https://doi.org/10.5194/bg-17-4153-2020, https://doi.org/10.5194/bg-17-4153-2020, 2020
Short summary
Short summary
Our study showed how ocean acidification can exert both direct and indirect influences on the interactions among trophic levels within the microbial loop. Microbial grazer abundance was reduced at CO2 concentrations at and above 634 µatm, while microbial communities increased in abundance, likely due to a reduction in being grazed. Such changes in predator–prey interactions with ocean acidification could have significant effects on the food web and biogeochemistry in the Southern Ocean.
Mirjana Najdek, Marino Korlević, Paolo Paliaga, Marsej Markovski, Ingrid Ivančić, Ljiljana Iveša, Igor Felja, and Gerhard J. Herndl
Biogeosciences, 17, 3299–3315, https://doi.org/10.5194/bg-17-3299-2020, https://doi.org/10.5194/bg-17-3299-2020, 2020
Short summary
Short summary
The response of Cymodocea nodosa to environmental changes was reported during a 15-month period. The meadow decline was triggered in spring by the simultaneous reduction of available light in the water column and the creation of anoxic conditions in the rooted area. This disturbance was critical for the plant since it took place during its recruitment phase when metabolic needs are maximal and stored reserves minimal. The loss of such habitat-forming seagrass is a major environmental concern.
Timm Schoening, Autun Purser, Daniel Langenkämper, Inken Suck, James Taylor, Daphne Cuvelier, Lidia Lins, Erik Simon-Lledó, Yann Marcon, Daniel O. B. Jones, Tim Nattkemper, Kevin Köser, Martin Zurowietz, Jens Greinert, and Jose Gomes-Pereira
Biogeosciences, 17, 3115–3133, https://doi.org/10.5194/bg-17-3115-2020, https://doi.org/10.5194/bg-17-3115-2020, 2020
Short summary
Short summary
Seafloor imaging is widely used in marine science and industry to explore and monitor areas of interest. The selection of the most appropriate imaging gear and deployment strategy depends on the target application. This paper compares imaging platforms like autonomous vehicles or towed camera frames and different deployment strategies of those in assessing the megafauna abundance of polymetallic-nodule fields. The deep-sea mining industry needs that information for robust impact monitoring.
Tatsuro Tanioka and Katsumi Matsumoto
Biogeosciences, 17, 2939–2954, https://doi.org/10.5194/bg-17-2939-2020, https://doi.org/10.5194/bg-17-2939-2020, 2020
Short summary
Short summary
We conducted an extensive literature survey (meta-analysis) on how the C : N : P ratio varies with change in key environmental drivers. We found that the expected reduction in nutrients and warming under the future climate change scenario is likely to result in increased C : P and C : N of marine phytoplankton. Further, our findings highlight the greater stoichiometric plasticity of eukaryotes over prokaryotes, which provide us insights on how to understand and model plankton.
Vanessa Joglar, Antero Prieto, Esther Barber-Lluch, Marta Hernández-Ruiz, Emilio Fernández, and Eva Teira
Biogeosciences, 17, 2807–2823, https://doi.org/10.5194/bg-17-2807-2020, https://doi.org/10.5194/bg-17-2807-2020, 2020
Short summary
Short summary
Coastal marine ecosystems are among the most ecologically and economically productive areas providing a large fraction of ecosystem goods and services to human populations, and B vitamins have long been considered important growth factors for phytoplankton. Our findings indicate that the responses of microbial plankton to B-vitamin supply are mainly driven by the bacterial community composition and that microbial plankton in this area seems to be well adapted to cope with B-vitamin shortage.
Tasnim Patel, Henri Robert, Cedric D'Udekem D'Acoz, Koen Martens, Ilse De Mesel, Steven Degraer, and Isa Schön
Biogeosciences, 17, 2731–2744, https://doi.org/10.5194/bg-17-2731-2020, https://doi.org/10.5194/bg-17-2731-2020, 2020
Short summary
Short summary
Exploitation of deep-sea resources in one of the largest ecosystems on the planet has rendered research of its biodiversity more urgent than ever before. We investigated the known habitats and connectivity of deep-sea scavenging amphipods and obtained important knowledge about several species. We also demonstrated that a long-term disturbance experiment has possibly reduced amphipod biodiversity. These data and further sampling expeditions are instrumental for formulating sustainable policies.
Daphne Cuvelier, Pedro A. Ribeiro, Sofia P. Ramalho, Daniel Kersken, Pedro Martinez Arbizu, and Ana Colaço
Biogeosciences, 17, 2657–2680, https://doi.org/10.5194/bg-17-2657-2020, https://doi.org/10.5194/bg-17-2657-2020, 2020
Short summary
Short summary
Polymetallic nodule mining will remove hard substrata from the abyssal deep-sea floor. The only neighbouring ecosystems featuring hard substratum are seamounts, and their inhabiting fauna could aid in recovery post-mining. Nevertheless, first observations of seamount megafauna were very different from nodule-associated megafauna and showed little overlap. The possible uniqueness of these ecosystems implies that they should be included in management plans for the conservation of biodiversity.
Karen F. Wishner, Brad Seibel, and Dawn Outram
Biogeosciences, 17, 2315–2339, https://doi.org/10.5194/bg-17-2315-2020, https://doi.org/10.5194/bg-17-2315-2020, 2020
Short summary
Short summary
Increasing deoxygenation and oxygen minimum zone expansion are consequences of global warming. Copepod species had different vertical distribution strategies and physiologies associated with oxygen profile variability (0–1000 m). Species (1) changed vertical distributions and maximum abundance depth, (2) shifted diapause depth, (3) changed diel vertical migration depths, or (4) changed epipelagic depth range in the aerobic mixed layer. Present-day variability helps predict future scenarios.
Magdalini Christodoulou, Timothy O'Hara, Andrew F. Hugall, Sahar Khodami, Clara F. Rodrigues, Ana Hilario, Annemiek Vink, and Pedro Martinez Arbizu
Biogeosciences, 17, 1845–1876, https://doi.org/10.5194/bg-17-1845-2020, https://doi.org/10.5194/bg-17-1845-2020, 2020
Short summary
Short summary
Unexpectedly high diversity was revealed in areas licenced for polymetallic nodule mining exploration in the Pacific Ocean. For the first time, a comprehensive reference library including 287 novel ophiuroid sequences allocated to 43 species was produced. Differences in food availability along the nodule province of CCZ were reflected in the biodiversity patterns observed. The APEI3's dissimilarity with the exploration contract areas questions its ability to serve as a biodiversity reservoir.
Julie Meilland, Hélène Howa, Vivien Hulot, Isaline Demangel, Joëlle Salaün, and Thierry Garlan
Biogeosciences, 17, 1437–1450, https://doi.org/10.5194/bg-17-1437-2020, https://doi.org/10.5194/bg-17-1437-2020, 2020
Short summary
Short summary
This study reports on planktonic foraminifera (PF) diversity and distribution in the Barents Sea. The species Globigerinita uvula and Turborotalita quinqueloba dominate the water column while surface sediments are dominated by Neogloboquadrina pachyderma. We hypothesize the unusual dominance of G. uvula in the water to be a seasonal signal or a result of climate forcing. Size-normalized-protein concentrations of PF show a northward decrease, suggesting biomass to vary with the environment.
Julien Richirt, Bettina Riedel, Aurélia Mouret, Magali Schweizer, Dewi Langlet, Dorina Seitaj, Filip J. R. Meysman, Caroline P. Slomp, and Frans J. Jorissen
Biogeosciences, 17, 1415–1435, https://doi.org/10.5194/bg-17-1415-2020, https://doi.org/10.5194/bg-17-1415-2020, 2020
Short summary
Short summary
The paper presents the response of benthic foraminiferal communities to seasonal absence of oxygen coupled with the presence of hydrogen sulfide, considered very harmful for several living organisms.
Our results suggest that the foraminiferal community mainly responds as a function of the duration of the adverse conditions.
This knowledge is especially useful to better understand the ecology of benthic foraminifera but also in the context of palaeoceanographic interpretations.
Xiangqi Yi, Fei-Xue Fu, David A. Hutchins, and Kunshan Gao
Biogeosciences, 17, 1169–1180, https://doi.org/10.5194/bg-17-1169-2020, https://doi.org/10.5194/bg-17-1169-2020, 2020
Short summary
Short summary
Combined effects of warming and light intensity were estimated in N2-fixing cyanobacterium Trichodesmium. Its physiological responses to warming were significantly modulated by light, with growth peaking at 27 °C under the light-saturating condition but being non-responsive across the range of 23–31 °C under the light-limiting condition. Light shortage also weakened the acclimation ability of Trichodesmium to warming, making light-limited Trichodesmium more sensitive to acute temperature change.
Jan Goleń, Jarosław Tyszka, Ulf Bickmeyer, and Jelle Bijma
Biogeosciences, 17, 995–1011, https://doi.org/10.5194/bg-17-995-2020, https://doi.org/10.5194/bg-17-995-2020, 2020
Short summary
Short summary
We studied the organisation and dynamics of actin in foraminifera. Actin is one of the key structural proteins in most lifeforms. Our investigations show that in foraminifera it forms small granules, around 1 µm in diameter, that display rapid movement. This granularity is unusual in comparison to other organisms. We suppose that these granules are most likely involved in the formation of all types of pseudopods responsible for movement, food capturing, biomineralisation, and other functions.
Cited articles
Alonso-Gutierrez, J., Teramoto, M., Yamazoe, A., Harayama, S., Figueras, A., and Novoa, B.: Alkane-degrading properties of Dietzia sp. H0B, a key player in the Prestige oil spill biodegradation (NW Spain), J. Appl. Microbiol., 111, 800–810, https://doi.org/10.1111/j.1365-2672.2011.05104.x, 2011.
Baelum, J., Borglin, S., Chakraborty, R., Fortney, J. L., Lamendella, R., Mason, O. U., Auer, M., Zemla, M., Bill, M., Conrad, M. E., Malfatti, S. A., Tringe, S. G., Holman, H. Y., Hazen, T. C., and Jansson, J. K.: Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill, Environ. Microbiol., 14, 2405–2416, https://doi.org/10.1111/j.1462-2920.2012.02780.x, 2012.
Balkwill, D. L., Drake, G. R., Reeves, R. H., Fredrickson, J. K., White, D. C., Ringelberg, D. B., Chandler, D. P., Romine, M. F., Kennedy, D. W., and Spadoni, C. M.: Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov, Int. J. Syst. Bacteriol., 47, 191–201, 1997.
Baumard, P., Budzinski, H., and Garrigues, P.: Polycyclic aromatic hydrocarbons in sediments and mussels of the western Mediterranean sea, Environ. Toxicol. Chem., 17, 765–776, https://doi.org/10.1002/etc.5620170501, 1998.
Becker, S., Halsall, C. J., Tych, W., Hung, H., Attewell, S., Blanchard, P., Li, H., Fellin, P., Stern, G., Billeck, B., and Friesen, S.: Resolving the Long-Term Trends of Polycyclic Aromatic Hydrocarbons in the Canadian Arctic Atmosphere, Environ. Sci. Tech. Lib., 40, 3217–3222, https://doi.org/10.1021/es052346l, 2006.
Benner, R., Benitez-Nelson, B., Kaiser, K., and Amon, R. M. W.: Export of young terrigenous dissolved organic carbon from rivers to the Arctic Ocean, Geophys. Res. Lett., 31, L05305, https://doi.org/10.1029/2003GL019251, 2004.
Boeuf, D., Humily, F., and Jeanthon, C.: Diversity of Arctic pelagic Bacteria with an emphasis on photoheterotrophs: a review, Biogeosciences, 11, 3309–3322, https://doi.org/10.5194/bg-11-3309-2014, 2014.
Brakstad, O. G. and Bonaunet, K.: Biodegradation of petroleum hydrocarbons in seawater at low temperatures (0–5 °C) and bacterial communities associated with degradation, Biodegradation, 17, 71–82, https://doi.org/10.1007/s10532-005-3342-8, 2006.
Coulon, F., McKew, B. A., Osborn, A. M., McGenity, T. J., and Timmis, K. N.: Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters, Environ. Microbiol., 9, 177–186, https://doi.org/10.1111/j.1462-2920.2006.01126.x, 2007.
Cui, Z., Lai, Q., Dong, C., and Shao, Z.: Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic Ridge, Environ. Microbiol., 10, 2138–2149, 2008.
Demaneche, S., Meyer, C., Micoud, J., Louwagie, M., Willison, J. C., and Jouanneau, Y.: Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a sphingomonas strain that degrades various polycyclic aromatic hydrocarbons, Appl. Environ. Microbiol., 70, 6714–6725, https://doi.org/10.1128/AEM.70.11.6714-6725.2004, 2004.
Deppe, U., Richnow, H. H., Michaelis, W., and Antranikian, G.: Degradation of crude oil by an arctic microbial consortium, Extremophiles, 9, 461–470, https://doi.org/10.1007/s00792-005-0463-2, 2005.
Dong, C., Chen, L., Liao, Y., and Shao, Z.: Phylogenetic and degrading genes analysis of a PAHdegrading bacterium TVG9-VII from deep-sea hydrythermal environment, Acta Microbiol. Sin., 51, 1548–1554, 2011.
Dong, C., Bai, X., Lai, Q., Xie, Y., Chen, X., and Shao, Z.: Draft Genome Sequence of Sphingobium sp. Strain C100, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium from the Deep-Sea Sediment of the Arctic Ocean, Genome Announc., 2, 2(1):e01210-13, https://doi.org/10.1128/genomeA.01210-13, 2014a.
Dong, C., Bai, X., Lai, Q., Xie, Y., Chen, X., and Shao, Z.: Draft Genome Sequence of Marinomonas sp. Strain D104, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium from the Deep-Sea Sediment of the Arctic Ocean, Genome Announc., 2, 2(1):e1211-13, https://doi.org/10.1128/genomeA.01211-13, 2014b.
Dubinsky, E. A., Conrad, M. E., Chakraborty, R., Bill, M., Borglin, S. E., Hollibaugh, J. T., Mason, O. U., Y., M. P., Reid, F. C., Stringfellow, W. T., Tom, L. M., Hazen, T. C., and Andersen, G. L.: Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the gulf of Mexico, Environ. Sci. Tech. Lib., 47, 10860–10867, https://doi.org/10.1021/es401676y, 2013.
Dyksterhouse, S. E., Gray, J. P., Herwig, R. P., Lara, J. C., and Staley, J. T.: Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments, Int. J. Syst. Bacteriol., 45, 116–123, 1995.
Eriksson, M., Sodersten, E., Yu, Z., Dalhammar, G., and Mohn, W. W.: Degradation of Polycyclic Aromatic Hydrocarbons at Low Temperature under Aerobic and Nitrate-Reducing Conditions in Enrichment Cultures from Northern Soils, Appl. Environ. Microbiol., 69, 275–284, 2003.
Friedman, C. L. and Selin, N. E.: Long-range atmospheric transport of polycyclic aromatic hydrocarbons: a global 3-D model analysis including evaluation of Arctic sources, Environ. Sci. Tech. Lib., 46, 9501–9510, https://doi.org/10.1021/es301904d, 2012.
Gan, H. M., Hudson, A. O., Rahman, A. Y., Chan, K. G., and Savka, M. A.: Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation, BMC Genomics, 14:431, https://doi.org/10.1186/1471-2164-14-431, 2013.
Garcia, M. T., Ventosa, A., and Mellado, E.: Catabolic versatility of aromatic compound-degrading halophilic bacteria, FEMS Microbiol. Ecol., 54, 97–109, https://doi.org/10.1016/j.femsec.2005.03.009, 2005.
Gautier, D. L., Bird, K. J., Charpentier, R. R., Grantz, A., Houseknecht, D. W., Klett, T. R., Moore, T. E., Pitman, J. K., Schenk, C. J., and Schuenemeyer, J. H.: Assessment of undiscovered oil and gas in the Arctic, Science, 324, 1175–1179, 2009.
Geiselbrecht, A. D., Hedlund, B. P., Tichi, M. A., and Staley, J. T.: Isolation of Marine Polycyclic Aromatic Hydrocarbon (PAH)-Degrading Cycloclasticus Strains from the Gulf of Mexico and Comparison of Their PAH Degradation Ability with That of Puget Sound Cycloclasticus Strains, Appl. Environ. Microbiol., 64, 4703–4710, 1998.
Gerdes, B., Brinkmeyer, R., Dieckmann, G., and Helmke, E.: Influence of crude oil on changes of bacterial communities in Arctic sea-ice, FEMS Microbiol. Ecol., 53, 129–139, https://doi.org/10.1016/j.femsec.2004.11.010, 2005.
Giudice, A. L., Bruni, V., Domenico, M. D., and Michaud, L.: Psychrophiles – Cold-Adapted Hydrocarbon-Degrading Microorganisms, in: Handbook of Hydrocarbon and Lipid Microbiology, edited by: Timmis, K. N., Springer Berlin Heidelberg, 1897–1921, 2010.
Goldberg, E. D.: Synthetic organohalides in the sea, Proc. R. Soc. Lond. B. Biol. Sci., 189, 277–289, 1975.
Halsall, C. J., Barrie, L. A., Fellin, P., Muir, D. C. G., Billeck, B. N., Lockhart, L., Rovinsky, F. Y., Kononov, E. Y., and Pastukhov, B.: Spatial and Temporal Variation of Polycyclic Aromatic Hydrocarbons in the Arctic Atmosphere, Environ. Sci. Tech. Lib., 31, 3593–3599, https://doi.org/10.1021/es970342d, 1997.
Haritash, A. K. and Kaushik, C. P.: Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review, J. Hazard Mater., 169, 1–15, https://doi.org/10.1016/j.jhazmat.2009.03.137, 2009.
Hazen, T. C., Dubinsky, E. A., DeSantis, T. Z., Andersen, G. L., Piceno, Y. M., Singh, N., Jansson, J. K., Probst, A., Borglin, S. E., Fortney, J. L., Stringfellow, W. T., Bill, M., Conrad, M. E., Tom, L. M., Chavarria, K. L., Alusi, T. R., Lamendella, R., Joyner, D. C., Spier, C., Baelum, J., Auer, M., Zemla, M. L., Chakraborty, R., Sonnenthal, E. L., D'Haeseleer, P., Holman, H. Y., Osman, S., Lu, Z., Van Nostrand, J. D., Deng, Y., Zhou, J., and Mason, O. U.: Deep-sea oil plume enriches indigenous oil-degrading bacteria, Science, 330, 204–208, https://doi.org/10.1126/science.1195979, 2010.
Hedlund, B. P. and Staley, J. T.: Vibrio cyclotrophicus sp. nov., a polycyclic aromatic hydrocarbon (PAH)-degrading marine bacterium, Int. J. Syst. Evol. Micr., 51, 61–66, 2001.
Hedlund, B. P. and Staley, J. T.: Isolation and characterization of Pseudoalteromonas strains with divergent polycyclic aromatic hydrocarbon catabolic properties, Environ. Microbiol. 8, 178–182, 2006.
Hedlund, B. P., Geiselbrecht, A. D., Bair, T. J., and Staley, J. T.: Polycyclic aromatic hydrocarbon degradation by a new marine bacterium, Neptunomonas naphthovorans gen. nov., sp. nov, Appl. Environ. Microbiol., 65, 251–259, 1999.
Hedlund, B. P., Geiselbrecht, A. D., and Staley, J. T.: Marinobacter strain NCE312 has a Pseudomonas-like naphthalene dioxygenase, FEMS Microbiol. Lett., 201, 47–51, https://doi.org/10.1111/j.1574-6968.2001.tb10731.x, 2001.
Jin, H. M., Kim, J. M., Lee, H. J., Madsen, E. L., and Jeon, C. O.: Alteromonas As a Key Agent of Polycyclic Aromatic Hydrocarbon Biodegradation in Crude Oil-Contaminated Coastal Sediment, Environ. Sci. Tech. Lib., 46, 7731–7740, https://doi.org/10.1021/es3018545, 2012.
Kappell, A. D., Wei, Y., Newton, R. J., Van Nostrand, J. D., Zhou, J., McLellan, S. L., and Hristova, K. R.: The polycyclic aromatic hydrocarbon degradation potential of Gulf of Mexico native coastal microbial communities after the Deepwater Horizon oil spill, Front. Microbiol., 5:205, https://doi.org/10.3389/fmicb.2014.00205, 2014.
Kasai, Y., Kishira, H., and Harayama, S.: Bacteria belonging to the genus cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment, Appl. Environ. Microbiol., 68, 5625–5633, 2002.
Kodama, Y., Stiknowati, L. I., Ueki, A., Ueki, K., and Watanabe, K.: Thalassospira tepidiphila sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from seawater, Int. J. Syst. Evol. Micr., 58, 711–715, https://doi.org/10.1099/ijs.0.65476-0, 2008.
Konn, C., Charlou, J. L., Donval, J. P., Holm, N. G., Dehairs, F., and Bouillon, S.: Hydrocarbons and oxidized organic compounds in hydrothermal fluids from Rainbow and Lost City ultramafic-hosted vents, Chem. Geol., 258, 299–314, 2009.
Latimer, J. S. and Zheng, J.: The Sources, Transport, and Fate of PAHs in the Marine Environment, in: PAHs: An Ecotoxicological Perspective, John Wiley & Sons, Ltd, UK, 7–33, 2003.
Lobbes, J. M., Fitznar, H. P., and Kattner, G.: Biogeochemical characteristics of dissolved and particulate organic matter in Russian rivers entering the Arctic Ocean, Geochim. Cosmochim. Ac., 64, 2973–2983, 2000.
Ma, Y., Wang, L., and Shao, Z.: Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer, Environ. Microbiol., 8, 455–465, https://doi.org/10.1111/j.1462-2920.2005.00911.x, 2006.
Maruyama, A., Ishiwata, H., Kitamura, K., Sunamura, M., Fujita, T., Matsuo, M., and Higashihara, T.: Dynamics of microbial populations and strong selection for Cycloclasticus pugetii following the Nakhodka oil spill, Microb. Ecol., 46, 442–453, https://doi.org/10.1007/s00248-002-3010-z, 2003.
McClintock, J. B.: Arctic: sea-ice loss sparks oil drilling boom, Nature, 479, p. 478, https://doi.org/10.1038/479478e, 2011.
McKew, B. A., Coulon, F., Osborn, A. M., Timmis, K. N., and McGenity, T. J.: Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK, Environ. Microbiol., 9, 165–176, https://doi.org/10.1111/j.1462-2920.2006.01125.x, 2007a.
McKew, B. A., Coulon, F., Yakimov, M. M., Denaro, R., Genovese, M., Smith, C. J., Osborn, A. M., Timmis, K. N., and McGenity, T. J.: Efficacy of intervention strategies for bioremediation of crude oil in marine systems and effects on indigenous hydrocarbonoclastic bacteria, Environ. Microbiol., 9, 1562–1571, https://doi.org/10.1111/j.1462-2920.2007.01277.x, 2007b.
Melcher, R. J., Apitz, S. E., and Hemmingsen, B. B.: Impact of irradiation and polycyclic aromatic hydrocarbon spiking on microbial populations in marine sediment for future aging and biodegradability studies, Appl. Environ. Microbiol., 68, 2858–2868, 2002.
Niepceron, M., Portet-Koltalo, F., Merlin, C., Motelay-Massei, A., Barray, S., and Bodilis, J.: Both Cycloclasticus spp. and Pseudomonas spp. as PAH-degrading bacteria in the Seine estuary (France), FEMS Microbiol Ecol, 71, 137–147, https://doi.org/10.1111/j.1574-6941.2009.00788.x, 2010.
Notomista, E., Pennacchio, F., Cafaro, V., Smaldone, G., Izzo, V., Troncone, L., Varcamonti, M., and Di Donato, A.: The marine isolate Novosphingobium sp. PP1Y shows specific adaptation to use the aromatic fraction of fuels as the sole carbon and energy source, Microb. Ecol., 61, 582–594, https://doi.org/10.1007/s00248-010-9786-3, 2011.
Opsahl, S., Benner, R., and Amon, R. M. W.: Major flux of terrigenous dissolved organic matter through the Arctic Ocean, 8, American Society of Limnology and Oceanography, Waco, TX, ETATS-UNIS, 1999.
Ortega-Retuerta, E., Jeffrey, W. H., Babin, M., Bélanger, S., Benner, R., Marie, D., Matsuoka, A., Raimbault, P., and Joux, F.: Carbon fluxes in the Canadian Arctic: patterns and drivers of bacterial abundance, production and respiration on the Beaufort Sea margin, Biogeosciences, 9, 3679–3692, https://doi.org/10.5194/bg-9-3679-2012, 2012.
Proskurowski, G., Lilley, M. D., Seewald, J. S., Fruh-Green, G. L., Olson, E. J., Lupton, J. E., Sylva, S. P., and Kelley, D. S.: Abiogenic Hydrocarbon Production at Lost City Hydrothermal Field, Science, 319, 604–607, 2008.
Schmidt, C. W.: Offshore exploration to commence in the Arctic: can shell's oil-spill response plans keep up?, Environ. Health Persp., 120, 194–199, https://doi.org/10.1289/ehp.120-a194, 2012.
Schneiker, S., Martins dos Santos, V. A., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., Chernikova, T. N., Denaro, R., Ferrer, M., Gertler, C., Goesmann, A., Golyshina, O. V., Kaminski, F., Khachane, A. N., Lang, S., Linke, B., McHardy, A. C., Meyer, F., Nechitaylo, T., Puhler, A., Regenhardt, D., Rupp, O., Sabirova, J. S., Selbitschka, W., Yakimov, M. M., Timmis, K. N., Vorholter, F. J., Weidner, S., Kaiser, O., and Golyshin, P. N.: Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis, Nat. Biotechnol., 24, 997–1004, https://doi.org/10.1038/nbt1232, 2006.
Shao, Z., Cui, Z., Dong, C., Lai, Q., and Chen, L.: Analysis of a PAH-degrading bacterial population in subsurface sediments on the Mid-Atlantic Ridge, Deep-Sea Res. 57, 724–730, 2010.
Simoneit, B. R. T., Lein, A. Y., Peresypkin, V. I., and Osipov, G. A.: Composition and origin of hydrothermal petroleum and associated lipids in the sulfide deposits of the Rainbow field (Mid-Atlantic Ridge at 36N), Geochim. Cosmochim.a Ac., 68, 2275–2294, 2004.
Sohn, J. H., Kwon, K. K., Kang, J. H., Jung, H. B., and Kim, S. J.: Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment, Int. J. Syst. Evol. Micr., 54, 1483–1487, https://doi.org/10.1099/ijs.0.02945-0, 2004.
Sorensen, S. R., Johnsen, A. R., Jensen, A., and Jacobsen, C. S.: Presence of psychrotolerant phenanthrene-mineralizing bacterial populations in contaminated soils from the Greenland High Arctic, FMEs Microbiol. Lett., 305, 148–154, https://doi.org/10.1111/j.1574-6968.2010.01920.x, 2010.
Teramoto, M., Suzuki, M., Okazaki, F., Hatmanti, A., and Harayama, S.: Oceanobacter-related bacteria are important for the degradation of petroleum aliphatic hydrocarbons in the tropical marine environment, Microbiology+, 155, 3362–3370, https://doi.org/10.1099/mic.0.030411-0, 2009.
Wang, B., Lai, Q., Cui, Z., Tan, T., and Shao, Z.: A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1, Environ. Microbiol., 10, 1948–1963, https://doi.org/10.1111/j.1462-2920.2008.01611.x, 2008.
Whyte, L. G., Bourbonniere, L., and Greer, C. W.: Biodegradation of petroleum hydrocarbons by psychrotrophic Pseudomonas strains possessing both alkane (alk) and naphthalene (nah) catabolic pathways, Appl. Environ. Microbiol., 63, 3719–3723, 1997.
Witt, G.: Polycyclic aromatic hydrocarbons in water and sediment of the Baltic Sea, Mar. Poll. Bull., 31, 237–248, https://doi.org/10.1016/0025-326X(95)00174-L, 1995.
Wu, J. Y., Jiang, X. T., Jiang, Y. X., Lu, S. Y., Zou, F., and Zhou, H. W.: Effects of polymerase, template dilution and cycle number on PCR based 16S rRNA diversity analysis using the deep sequencing method, BMC Microbiol., 10:255, https://doi.org/10.1186/1471-2180-10-255, 2010.
Yakimov, M. M., Giuliano, L., Denaro, R., Crisafi, E., Chernikova, T. N., Abraham, W. R., Luensdorf, H., Timmis, K. N., and Golyshin, P. N.: Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons, Int. J. Syst. Evol. Micr., 54, 141–148, 2004.
Yakimov, M. M., Timmis, K. N., and Golyshin, P. N.: Obligate oil-degrading marine bacteria, Curr. Opin. Biotechnol., 18, 257–266, https://doi.org/10.1016/j.copbio.2007.04.006, 2007.
Yuan, J., Lai, Q., Zheng, T., and Shao, Z.: Novosphingobium indicum sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from a deep-sea environment, Int. J. Syst. Evol. Micr., 59, 2084–2088, 2009.
Yunker, M. B. and Macdonald, R. W.: Composition and Origins of Polycyclic Aromatic Hydrocarbons in the Mackenzie River and on the Beaufort Sea Shelf, Arctic, 48, 118–129, 1995.
Yunker, M. B., Macdonald, R. W., Snowdon, L. R., and Fowler, B. R.: Alkane and PAH biomarkers as tracers of terrigenous organic carbon in Arctic Ocean sediments, Org. Geochem., 42, 1109–1146, 2011.
Zaborska, A., Carroll, J., Pazdro, K., and Pempkowiak, J.: Spatio-temporal patterns of PAHs, PCBs and HCB in sediments of the western Barents Sea, Oceanologia, 53, 1005–1026, 2011.
Zheng, G. J., Man, B. K. W., Lam, J. C. W., Lam, M. H. W., and Lam, P. K. S.: Distribution and sources of polycyclic aromatic hydrocarbons in the sediment of a sub-tropical coastal wetland, Water Res., 36, 1457–1468, 2002.
Altmetrics
Final-revised paper
Preprint