Articles | Volume 11, issue 18
https://doi.org/10.5194/bg-11-4953-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-4953-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
16 Sep 2014
Research article |
| 16 Sep 2014
Reduction of ferrihydrite with adsorbed and coprecipitated organic matter: microbial reduction by Geobacter bremensis vs. abiotic reduction by Na-dithionite
K. Eusterhues
Institut für Geowissenschaften, Friedrich-Schiller-Universität Jena, 07749 Jena, Germany
A. Hädrich
Institut für Ökologie, Friedrich-Schiller-Universität Jena, 07743 Jena, Germany
J. Neidhardt
Institut für Geowissenschaften, Friedrich-Schiller-Universität Jena, 07749 Jena, Germany
K. Küsel
Institut für Ökologie, Friedrich-Schiller-Universität Jena, 07743 Jena, Germany
German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
T. F. Keller
Chair of Materials Science, Otto Schott Institute of Materials Research, Faculty of Physics and Astronomy, Friedrich-Schiller-University Jena, 07743 Jena, Germany
now at: Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany
K. D. Jandt
Chair of Materials Science, Otto Schott Institute of Materials Research, Faculty of Physics and Astronomy, Friedrich-Schiller-University Jena, 07743 Jena, Germany
K. U. Totsche
Institut für Geowissenschaften, Friedrich-Schiller-Universität Jena, 07749 Jena, Germany
Related authors
Rebecca Elizabeth Cooper, Karin Eusterhues, Carl-Eric Wegner, Kai Uwe Totsche, and Kirsten Küsel
Biogeosciences, 14, 5171–5188, https://doi.org/10.5194/bg-14-5171-2017, https://doi.org/10.5194/bg-14-5171-2017, 2017
Short summary
Short summary
In this study we show increasing organic matter (OM) content on ferrihydrite surfaces enhances Fe reduction by the model Fe reducer S. oneidensis and a microbial consortia extracted from peat. Similarities in reduction rates between S. oneidensis and the consortia suggest electron shuttling dominates in OM-rich soils. Community profile analyses showed enrichment of fermenters with pure ferrihydrite, whereas OM–mineral complexes favored enrichment of Fe-reducing Desulfobacteria and Pelosinus sp.
David Ho, Michał Gałkowski, Friedemann Reum, Santiago Botía, Julia Marshall, Kai Uwe Totsche, and Christoph Gerbig
EGUsphere, https://doi.org/10.5194/egusphere-2023-2839, https://doi.org/10.5194/egusphere-2023-2839, 2024
Short summary
Short summary
Atmospheric model users oftentimes overlook the impact of the land-atmosphere interaction. This study accessed various different setups of WRF-GHG simulations that ensure consistency between the model and driving reanalysis fields. We found that a combination of nudging and frequent re-initialization, allows for certain improvement by constraining the soil moisture fields, and, through their impact on atmospheric mixing, to improve atmospheric transport.
Saqr Munassar, Guillaume Monteil, Marko Scholze, Ute Karstens, Christian Rödenbeck, Frank-Thomas Koch, Kai U. Totsche, and Christoph Gerbig
Atmos. Chem. Phys., 23, 2813–2828, https://doi.org/10.5194/acp-23-2813-2023, https://doi.org/10.5194/acp-23-2813-2023, 2023
Short summary
Short summary
Using different transport models results in large errors in optimized fluxes in the atmospheric inversions. Boundary conditions and inversion system configurations lead to a smaller but non-negligible impact. The findings highlight the importance to validate transport models for further developments but also to properly account for such errors in inverse modelling. This will help narrow the convergence of gas estimates reported in the scientific literature from different inversion frameworks.
Karel Castro-Morales, Anna Canning, Sophie Arzberger, Will A. Overholt, Kirsten Küsel, Olaf Kolle, Mathias Göckede, Nikita Zimov, and Arne Körtzinger
Biogeosciences, 19, 5059–5077, https://doi.org/10.5194/bg-19-5059-2022, https://doi.org/10.5194/bg-19-5059-2022, 2022
Short summary
Short summary
Permafrost thaw releases methane that can be emitted into the atmosphere or transported by Arctic rivers. Methane measurements are lacking in large Arctic river regions. In the Kolyma River (northeast Siberia), we measured dissolved methane to map its distribution with great spatial detail. The river’s edge and river junctions had the highest methane concentrations compared to other river areas. Microbial communities in the river showed that the river’s methane likely is from the adjacent land.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
Short summary
Short summary
Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Saqr Munassar, Christian Rödenbeck, Frank-Thomas Koch, Kai U. Totsche, Michał Gałkowski, Sophia Walther, and Christoph Gerbig
Atmos. Chem. Phys., 22, 7875–7892, https://doi.org/10.5194/acp-22-7875-2022, https://doi.org/10.5194/acp-22-7875-2022, 2022
Short summary
Short summary
The results obtained from ensembles of inversions over 13 years show the largest spread in the a posteriori fluxes over the station set ensemble. Using different prior fluxes in the inversions led to a smaller impact. Drought occurrences in 2018 and 2019 affected CO2 fluxes as seen in net ecosystem exchange estimates. Our study highlights the importance of expanding the atmospheric site network across Europe to better constrain CO2 fluxes in inverse modelling.
Jinxuan Chen, Christoph Gerbig, Julia Marshall, and Kai Uwe Totsche
Geosci. Model Dev., 13, 4091–4106, https://doi.org/10.5194/gmd-13-4091-2020, https://doi.org/10.5194/gmd-13-4091-2020, 2020
Short summary
Short summary
One of the essential challenge for atmospheric CO2 forecasting is predicting CO2 flux variation on synoptic timescale. For CAMS CO2 forecast, a process-based vegetation model is used.
In this research we evaluate another type of model (i.e., the light-use-efficiency model VPRM), which is a data-driven approach and thus ideal for realistic estimation, on its ability of flux prediction. Errors from different sources are assessed, and overall the model is capable of CO2 flux prediction.
Fabio Boschetti, Valerie Thouret, Greet Janssens Maenhout, Kai Uwe Totsche, Julia Marshall, and Christoph Gerbig
Atmos. Chem. Phys., 18, 9225–9241, https://doi.org/10.5194/acp-18-9225-2018, https://doi.org/10.5194/acp-18-9225-2018, 2018
Short summary
Short summary
Retrieving surface–atmosphere fluxes from the combination of atmospheric observations with atmospheric transport models can benefit from combining multiple species in a single inversion. The underlying effect is that species such as CO2 and CO have partially overlapping emission patterns for given sectors and fuel types and so share part of the uncertainties, both related to the a priori knowledge of emissions, and to model–data mismatch error. We show this for airborne profile data from IAGOS.
Bernd Kohlhepp, Robert Lehmann, Paul Seeber, Kirsten Küsel, Susan E. Trumbore, and Kai U. Totsche
Hydrol. Earth Syst. Sci., 21, 6091–6116, https://doi.org/10.5194/hess-21-6091-2017, https://doi.org/10.5194/hess-21-6091-2017, 2017
Rebecca Elizabeth Cooper, Karin Eusterhues, Carl-Eric Wegner, Kai Uwe Totsche, and Kirsten Küsel
Biogeosciences, 14, 5171–5188, https://doi.org/10.5194/bg-14-5171-2017, https://doi.org/10.5194/bg-14-5171-2017, 2017
Short summary
Short summary
In this study we show increasing organic matter (OM) content on ferrihydrite surfaces enhances Fe reduction by the model Fe reducer S. oneidensis and a microbial consortia extracted from peat. Similarities in reduction rates between S. oneidensis and the consortia suggest electron shuttling dominates in OM-rich soils. Community profile analyses showed enrichment of fermenters with pure ferrihydrite, whereas OM–mineral complexes favored enrichment of Fe-reducing Desulfobacteria and Pelosinus sp.
Martin E. Nowak, Valérie F. Schwab, Cassandre S. Lazar, Thomas Behrendt, Bernd Kohlhepp, Kai Uwe Totsche, Kirsten Küsel, and Susan E. Trumbore
Hydrol. Earth Syst. Sci., 21, 4283–4300, https://doi.org/10.5194/hess-21-4283-2017, https://doi.org/10.5194/hess-21-4283-2017, 2017
Short summary
Short summary
In the present study we combined measurements of dissolved inorganic carbon (DIC) isotopes with a set of different geochemical and microbiological methods in order to get a comprehensive view of biogeochemical cycling and groundwater flow in two limestone aquifer assemblages. This allowed us to understand interactions and feedbacks between microbial communities, their carbon sources, and water chemistry.
Valérie F. Schwab, Martina Herrmann, Vanessa-Nina Roth, Gerd Gleixner, Robert Lehmann, Georg Pohnert, Susan Trumbore, Kirsten Küsel, and Kai U. Totsche
Biogeosciences, 14, 2697–2714, https://doi.org/10.5194/bg-14-2697-2017, https://doi.org/10.5194/bg-14-2697-2017, 2017
Short summary
Short summary
We used phospholipid fatty acids (PLFAs) to link specific microbial markers to the spatio-temporal changes of groundwater physico-chemistry. PLFA-based functional groups were directly supported by DNA/RNA results. O2 resulted in increased eukaryotic biomass and abundance of nitrite-oxidizing bacteria but impeded anammox, sulphate-reducing and iron-reducing bacteria. Our study demonstrates the power of PLFA-based approaches to study the nature and activity of microorganisms in pristine aquifers.
Shreeya Verma, Julia Marshall, Christoph Gerbig, Christian Rödenbeck, and Kai Uwe Totsche
Atmos. Chem. Phys., 17, 5665–5675, https://doi.org/10.5194/acp-17-5665-2017, https://doi.org/10.5194/acp-17-5665-2017, 2017
Short summary
Short summary
The inverse modelling approach for estimating surface fluxes is based on transport models that have an imperfect representation of atmospheric processes like vertical mixing. In this paper, we show how assimilating commercial aircraft-based vertical profiles of CO2 into inverse models can help reduce error due to the transport model, thus providing more accurate estimates of surface fluxes. Further, the reduction in flux uncertainty due to aircraft profiles from the IAGOS project is quantified.
P. Kountouris, C. Gerbig, K.-U. Totsche, A. J. Dolman, A. G. C. A. Meesters, G. Broquet, F. Maignan, B. Gioli, L. Montagnani, and C. Helfter
Biogeosciences, 12, 7403–7421, https://doi.org/10.5194/bg-12-7403-2015, https://doi.org/10.5194/bg-12-7403-2015, 2015
M. E. Nowak, F. Beulig, J. von Fischer, J. Muhr, K. Küsel, and S. E. Trumbore
Biogeosciences, 12, 7169–7183, https://doi.org/10.5194/bg-12-7169-2015, https://doi.org/10.5194/bg-12-7169-2015, 2015
Short summary
Short summary
Microorganisms have been recognized as an important source of soil organic matter (SOM). Autotrophic microorganisms utilize CO2 instead of organic carbon. Microbial CO2 fixation is accompanied with high 13C isotope discrimination. Because autotrophs are abundant in soils, they might be a significant factor influencing 13C signatures of SOM. Thus, it is important to asses the importance of autotrophs for C isotope signatures in soils, in order to use isotopes as a tracer for soil C dynamics.
J. F. Mori, T. R. Neu, S. Lu, M. Händel, K. U. Totsche, and K. Küsel
Biogeosciences, 12, 5277–5289, https://doi.org/10.5194/bg-12-5277-2015, https://doi.org/10.5194/bg-12-5277-2015, 2015
Short summary
Short summary
We studied filamentous macroscopic algae growing in metal-rich stream water that leaked from a former uranium-mining district. These algae were encrusted with Fe-deposits that were associated with microbes, mainly Gallionella-related Fe-oxidizing bacteria, and extracellular polymeric substances. Algae with a lower number of chloroplasts often exhibited discontinuous series of precipitates, likely due to the intercalary growth of algae which allowed them to avoid detrimental encrustation.
R. Kretschmer, C. Gerbig, U. Karstens, G. Biavati, A. Vermeulen, F. Vogel, S. Hammer, and K. U. Totsche
Atmos. Chem. Phys., 14, 7149–7172, https://doi.org/10.5194/acp-14-7149-2014, https://doi.org/10.5194/acp-14-7149-2014, 2014
Related subject area
Biogeochemistry: Soils
Nine years of warming and nitrogen addition in the Tibetan grassland promoted loss of soil organic carbon but did not alter the bulk change in chemical structure
Soil priming effects and involved microbial community along salt gradients
Adjustments to the Rock-Eval® thermal analysis for soil organic and inorganic carbon quantification
Ecosystem-specific patterns and drivers of global reactive iron mineral-associated organic carbon
Dark septate endophytic fungi associated with pioneer grass inhabiting volcanic deposits and their functions in promoting plant growth
Global patterns and drivers of phosphorus fractions in natural soils
Reviews and syntheses: Iron – a driver of nitrogen bioavailability in soils?
Non-mycorrhizal root-associated fungi increase soil C stocks and stability via diverse mechanisms
How well does ramped thermal oxidation quantify the age distribution of soil carbon? Assessing thermal stability of physically and chemically fractionated soil organic matter
Differential temperature sensitivity of intracellular metabolic processes and extracellular soil enzyme activities
Mapping soil organic carbon fractions for Australia, their stocks, and uncertainty
Technical note: The recovery rate of free particulate organic matter from soil samples is strongly affected by the method of density fractionation
Deforestation for agriculture leads to soil warming and enhanced litter decomposition in subarctic soils
Temperature sensitivity of soil organic carbon respiration along a forested elevation gradient in the Rwenzori Mountains, Uganda
Moisture and temperature effects on the radiocarbon signature of respired carbon dioxide to assess stability of soil carbon in the Tibetan Plateau
The influence of elevated CO2 and soil depth on rhizosphere activity and nutrient availability in a mature Eucalyptus woodland
The paradox of assessing greenhouse gases from soils for nature-based solutions
Management-induced changes in soil organic carbon on global croplands
Pore network modeling as a new tool for determining gas diffusivity in peat
Temperature sensitivity of dark CO2 fixation in temperate forest soils
Effects of precipitation seasonality, irrigation, vegetation cycle and soil type on enhanced weathering – modeling of cropland case studies across four sites
Stable isotope profiles of soil organic carbon in forested and grassland landscapes in the Lake Alaotra basin (Madagascar): insights in past vegetation changes
Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential
Dynamics of rare earth elements and associated major and trace elements during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation
To what extent can soil moisture and soil Cu contamination stresses affect nitrous species emissions? Estimation through calibration of a nitrification–denitrification model
Carbon, nitrogen, and phosphorus stoichiometry of organic matter in Swedish forest soils and its relationship with climate, tree species, and soil texture
Soil geochemistry as a driver of soil organic matter composition: insights from a soil chronosequence
Leaching of inorganic and organic phosphorus and nitrogen in contrasting beech forest soils – seasonal patterns and effects of fertilization
Age and chemistry of dissolved organic carbon reveal enhanced leaching of ancient labile carbon at the permafrost thaw zone
Soil organic carbon stabilization mechanisms and temperature sensitivity in old terraced soils
Effect of organic carbon addition on paddy soil organic carbon decomposition under different irrigation regimes
Soil profile connectivity can impact microbial substrate use, affecting how soil CO2 effluxes are controlled by temperature
Additional carbon inputs to reach a 4 per 1000 objective in Europe: feasibility and projected impacts of climate change based on Century simulations of long-term arable experiments
Cycling and retention of nitrogen in European beech (Fagus sylvatica L.) ecosystems under elevated fructification frequency
Mercury mobility, colloid formation and methylation in a polluted Fluvisol as affected by manure application and flooding–draining cycle
Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model
Similar importance of edaphic and climatic factors for controlling soil organic carbon stocks of the world
Representing methane emissions from wet tropical forest soils using microbial functional groups constrained by soil diffusivity
Long-term bare-fallow soil fractions reveal thermo-chemical properties controlling soil organic carbon dynamics
Geochemical zones and environmental gradients for soils from the central Transantarctic Mountains, Antarctica
Age distribution, extractability, and stability of mineral-bound organic carbon in central European soils
Denitrification in soil as a function of oxygen availability at the microscale
Key drivers of pyrogenic carbon redistribution during a simulated rainfall event
Subsurface flow and phosphorus dynamics in beech forest hillslopes during sprinkling experiments: how fast is phosphorus replenished?
Estimating maximum fine-fraction organic carbon in UK grasslands
Millennial-age glycerol dialkyl glycerol tetraethers (GDGTs) in forested mineral soils: 14C-based evidence for stabilization of microbial necromass
Particles under stress: ultrasonication causes size and recovery rate artifacts with soil-derived POM but not with microplastics
Deepening roots can enhance carbonate weathering by amplifying CO2-rich recharge
Vertical mobility of pyrogenic organic matter in soils: a column experiment
Vertical partitioning of CO2 production in a forest soil
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
Short summary
Short summary
A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
Short summary
Short summary
Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
Short summary
Short summary
This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
Short summary
Short summary
This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
Short summary
Short summary
In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
Short summary
Short summary
We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia-Zhu Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
Short summary
Short summary
There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
EGUsphere, https://doi.org/10.5194/egusphere-2023-2046, https://doi.org/10.5194/egusphere-2023-2046, 2023
Short summary
Short summary
We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms, using multiple methods. Overall, the fungi benefited the storage of carbon in soil mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
Short summary
Short summary
Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
Short summary
Short summary
The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
Short summary
Short summary
Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
Short summary
Short summary
Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
Short summary
Short summary
We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
Short summary
Short summary
The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Andres Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos Sierra
EGUsphere, https://doi.org/10.5194/egusphere-2023-210, https://doi.org/10.5194/egusphere-2023-210, 2023
Short summary
Short summary
Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands while temperature did not have any influence. Our models showed the correspondence between Δ14C and transit time and could allow to understand future interactions between terrestrial and atmospheric carbon.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
Short summary
Short summary
Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
Short summary
Short summary
Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
Short summary
Short summary
Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
Short summary
Short summary
Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
Short summary
Short summary
Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
Short summary
Short summary
Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
Short summary
Short summary
In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
Short summary
Short summary
Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
Short summary
Short summary
We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
Laura Sereni, Bertrand Guenet, Charlotte Blasi, Olivier Crouzet, Jean-Christophe Lata, and Isabelle Lamy
Biogeosciences, 19, 2953–2968, https://doi.org/10.5194/bg-19-2953-2022, https://doi.org/10.5194/bg-19-2953-2022, 2022
Short summary
Short summary
This study focused on the modellisation of two important drivers of soil greenhouse gas emissions: soil contamination and soil moisture change. The aim was to include a Cu function in the soil biogeochemical model DNDC for different soil moisture conditions and then to estimate variation in N2O, NO2 or NOx emissions. Our results show a larger effect of Cu on N2 and N2O emissions than on the other nitrogen species and a higher effect for the soils incubated under constant constant moisture.
Marie Spohn and Johan Stendahl
Biogeosciences, 19, 2171–2186, https://doi.org/10.5194/bg-19-2171-2022, https://doi.org/10.5194/bg-19-2171-2022, 2022
Short summary
Short summary
We explored the ratios of carbon (C), nitrogen (N), and phosphorus (P) of organic matter in Swedish forest soils. The N : P ratio of the organic layer was most strongly related to the mean annual temperature, while the C : N ratios of the organic layer and mineral soil were strongly related to tree species even in the subsoil. The organic P concentration in the mineral soil was strongly affected by soil texture, which diminished the effect of tree species on the C to organic P (C : OP) ratio.
Moritz Mainka, Laura Summerauer, Daniel Wasner, Gina Garland, Marco Griepentrog, Asmeret Asefaw Berhe, and Sebastian Doetterl
Biogeosciences, 19, 1675–1689, https://doi.org/10.5194/bg-19-1675-2022, https://doi.org/10.5194/bg-19-1675-2022, 2022
Short summary
Short summary
The largest share of terrestrial carbon is stored in soils, making them highly relevant as regards global change. Yet, the mechanisms governing soil carbon stabilization are not well understood. The present study contributes to a better understanding of these processes. We show that qualitative changes in soil organic matter (SOM) co-vary with alterations of the soil matrix following soil weathering. Hence, the type of SOM that is stabilized in soils might change as soils develop.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
Short summary
Short summary
As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
Short summary
Short summary
Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Pengzhi Zhao, Daniel Joseph Fallu, Sara Cucchiaro, Paolo Tarolli, Clive Waddington, David Cockcroft, Lisa Snape, Andreas Lang, Sebastian Doetterl, Antony G. Brown, and Kristof Van Oost
Biogeosciences, 18, 6301–6312, https://doi.org/10.5194/bg-18-6301-2021, https://doi.org/10.5194/bg-18-6301-2021, 2021
Short summary
Short summary
We investigate the factors controlling the soil organic carbon (SOC) stability and temperature sensitivity of abandoned prehistoric agricultural terrace soils. Results suggest that the burial of former topsoil due to terracing provided an SOC stabilization mechanism. Both the soil C : N ratio and SOC mineral protection regulate soil SOC temperature sensitivity. However, which mechanism predominantly controls SOC temperature sensitivity depends on the age of the buried terrace soils.
Heleen Deroo, Masuda Akter, Samuel Bodé, Orly Mendoza, Haichao Li, Pascal Boeckx, and Steven Sleutel
Biogeosciences, 18, 5035–5051, https://doi.org/10.5194/bg-18-5035-2021, https://doi.org/10.5194/bg-18-5035-2021, 2021
Short summary
Short summary
We assessed if and how incorporation of exogenous organic carbon (OC) such as straw could affect decomposition of native soil organic carbon (SOC) under different irrigation regimes. Addition of exogenous OC promoted dissolution of native SOC, partly because of increased Fe reduction, leading to more net release of Fe-bound SOC. Yet, there was no proportionate priming of SOC-derived DOC mineralisation. Water-saving irrigation can retard both priming of SOC dissolution and mineralisation.
Frances A. Podrebarac, Sharon A. Billings, Kate A. Edwards, Jérôme Laganière, Matthew J. Norwood, and Susan E. Ziegler
Biogeosciences, 18, 4755–4772, https://doi.org/10.5194/bg-18-4755-2021, https://doi.org/10.5194/bg-18-4755-2021, 2021
Short summary
Short summary
Soil respiration is a large and temperature-responsive flux in the global carbon cycle. We found increases in microbial use of easy to degrade substrates enhanced the temperature response of respiration in soils layered as they are in situ. This enhanced response is consistent with soil composition differences in warm relative to cold climate forests. These results highlight the importance of the intact nature of soils rarely studied in regulating responses of CO2 fluxes to changing temperature.
Elisa Bruni, Bertrand Guenet, Yuanyuan Huang, Hugues Clivot, Iñigo Virto, Roberta Farina, Thomas Kätterer, Philippe Ciais, Manuel Martin, and Claire Chenu
Biogeosciences, 18, 3981–4004, https://doi.org/10.5194/bg-18-3981-2021, https://doi.org/10.5194/bg-18-3981-2021, 2021
Short summary
Short summary
Increasing soil organic carbon (SOC) stocks is beneficial for climate change mitigation and food security. One way to enhance SOC stocks is to increase carbon input to the soil. We estimate the amount of carbon input required to reach a 4 % annual increase in SOC stocks in 14 long-term agricultural experiments around Europe. We found that annual carbon input should increase by 43 % under current temperature conditions, by 54 % for a 1 °C warming scenario and by 120 % for a 5 °C warming scenario.
Rainer Brumme, Bernd Ahrends, Joachim Block, Christoph Schulz, Henning Meesenburg, Uwe Klinck, Markus Wagner, and Partap K. Khanna
Biogeosciences, 18, 3763–3779, https://doi.org/10.5194/bg-18-3763-2021, https://doi.org/10.5194/bg-18-3763-2021, 2021
Short summary
Short summary
In order to study the fate of litter nitrogen in forest soils, we combined a leaf litterfall exchange experiment using 15N-labeled leaf litter with long-term element budgets at seven European beech sites in Germany. It appears that fructification intensity, which has increased in recent decades, has a distinct impact on N retention in forest soils. Despite reduced nitrogen deposition, about 6 and 10 kg ha−1 of nitrogen were retained annually in the soils and in the forest stands, respectively.
Lorenz Gfeller, Andrea Weber, Isabelle Worms, Vera I. Slaveykova, and Adrien Mestrot
Biogeosciences, 18, 3445–3465, https://doi.org/10.5194/bg-18-3445-2021, https://doi.org/10.5194/bg-18-3445-2021, 2021
Short summary
Short summary
Our incubation experiment shows that flooding of polluted floodplain soils may induce pulses of both mercury (Hg) and methylmercury to the soil solution and threaten downstream ecosystems. We demonstrate that mobilization of Hg bound to manganese oxides is a relevant process in organic-matter-poor soils. Addition of organic amendments accelerates this mobilization but also facilitates the formation of nanoparticulate Hg and the subsequent fixation of Hg from soil solution to the soil.
Yao Zhang, Jocelyn M. Lavallee, Andy D. Robertson, Rebecca Even, Stephen M. Ogle, Keith Paustian, and M. Francesca Cotrufo
Biogeosciences, 18, 3147–3171, https://doi.org/10.5194/bg-18-3147-2021, https://doi.org/10.5194/bg-18-3147-2021, 2021
Short summary
Short summary
Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM helps removal of CO2 from the atmosphere. Here we present the result of the continued development of a mathematical model that simulates SOM and its measurable fractions. In this study, we simulated several grassland sites in the US, and the model generally captured the carbon and nitrogen amounts in SOM and their distribution between the measurable fractions throughout the entire soil profile.
Zhongkui Luo, Raphael A. Viscarra-Rossel, and Tian Qian
Biogeosciences, 18, 2063–2073, https://doi.org/10.5194/bg-18-2063-2021, https://doi.org/10.5194/bg-18-2063-2021, 2021
Short summary
Short summary
Using the data from 141 584 whole-soil profiles across the globe, we disentangled the relative importance of biotic, climatic and edaphic variables in controlling global SOC stocks. The results suggested that soil properties and climate contributed similarly to the explained global variance of SOC in four sequential soil layers down to 2 m. However, the most important individual controls are consistently soil-related, challenging current climate-driven framework of SOC dynamics.
Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, and Melanie A. Mayes
Biogeosciences, 18, 1769–1786, https://doi.org/10.5194/bg-18-1769-2021, https://doi.org/10.5194/bg-18-1769-2021, 2021
Short summary
Short summary
Humid tropical soils are important sources and sinks of methane. We used model simulation to understand how different kinds of microbes and observed soil moisture and oxygen dynamics contribute to production and consumption of methane along a wet tropical hillslope during normal and drought conditions. Drought alters the diffusion of oxygen and microbial substrates into and out of soil microsites, resulting in enhanced methane release from the entire hillslope during drought recovery.
Mathieu Chassé, Suzanne Lutfalla, Lauric Cécillon, François Baudin, Samuel Abiven, Claire Chenu, and Pierre Barré
Biogeosciences, 18, 1703–1718, https://doi.org/10.5194/bg-18-1703-2021, https://doi.org/10.5194/bg-18-1703-2021, 2021
Short summary
Short summary
Evolution of organic carbon content in soils could be a major driver of atmospheric greenhouse gas concentrations over the next century. Understanding factors controlling carbon persistence in soil is a challenge. Our study of unique long-term bare-fallow samples, depleted in labile organic carbon, helps improve the separation, evaluation and characterization of carbon pools with distinct residence time in soils and gives insight into the mechanisms explaining soil organic carbon persistence.
Melisa A. Diaz, Christopher B. Gardner, Susan A. Welch, W. Andrew Jackson, Byron J. Adams, Diana H. Wall, Ian D. Hogg, Noah Fierer, and W. Berry Lyons
Biogeosciences, 18, 1629–1644, https://doi.org/10.5194/bg-18-1629-2021, https://doi.org/10.5194/bg-18-1629-2021, 2021
Short summary
Short summary
Water-soluble salt and nutrient concentrations of soils collected along the Shackleton Glacier, Antarctica, show distinct geochemical gradients related to latitude, longitude, elevation, soil moisture, and distance from coast and glacier. Machine learning algorithms were used to estimate geochemical gradients for the region given the relationship with geography. Geography and surface exposure age drive salt and nutrient abundances, influencing invertebrate habitat suitability and biogeography.
Marion Schrumpf, Klaus Kaiser, Allegra Mayer, Günter Hempel, and Susan Trumbore
Biogeosciences, 18, 1241–1257, https://doi.org/10.5194/bg-18-1241-2021, https://doi.org/10.5194/bg-18-1241-2021, 2021
Short summary
Short summary
A large amount of organic carbon (OC) in soil is protected against decay by bonding to minerals. We studied the release of mineral-bonded OC by NaF–NaOH extraction and H2O2 oxidation. Unexpectedly, extraction and oxidation removed mineral-bonded OC at roughly constant portions and of similar age distributions, irrespective of mineral composition, land use, and soil depth. The results suggest uniform modes of interactions between OC and minerals across soils in quasi-steady state with inputs.
Lena Rohe, Bernd Apelt, Hans-Jörg Vogel, Reinhard Well, Gi-Mick Wu, and Steffen Schlüter
Biogeosciences, 18, 1185–1201, https://doi.org/10.5194/bg-18-1185-2021, https://doi.org/10.5194/bg-18-1185-2021, 2021
Short summary
Short summary
Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for different combinations of soils and water contents. Prediction accuracy of (N2O + N2) fluxes was highest with combined proxies for oxygen demand (CO2 flux) and oxygen supply (anaerobic soil volume fraction). Knowledge of denitrification completeness (product ratio) improved N2O predictions. Substitutions with cheaper proxies (soil organic matter, empirical diffusivity) reduced prediction accuracy.
Severin-Luca Bellè, Asmeret Asefaw Berhe, Frank Hagedorn, Cristina Santin, Marcus Schiedung, Ilja van Meerveld, and Samuel Abiven
Biogeosciences, 18, 1105–1126, https://doi.org/10.5194/bg-18-1105-2021, https://doi.org/10.5194/bg-18-1105-2021, 2021
Short summary
Short summary
Controls of pyrogenic carbon (PyC) redistribution under rainfall are largely unknown. However, PyC mobility can be substantial after initial rain in post-fire landscapes. We conducted a controlled simulation experiment on plots where PyC was applied on the soil surface. We identified redistribution of PyC by runoff and splash and vertical movement in the soil depending on soil texture and PyC characteristics (material and size). PyC also induced changes in exports of native soil organic carbon.
Michael Rinderer, Jaane Krüger, Friederike Lang, Heike Puhlmann, and Markus Weiler
Biogeosciences, 18, 1009–1027, https://doi.org/10.5194/bg-18-1009-2021, https://doi.org/10.5194/bg-18-1009-2021, 2021
Short summary
Short summary
We quantified the lateral and vertical subsurface flow (SSF) and P concentrations of three beech forest plots with contrasting soil properties during sprinkling experiments. Vertical SSF was 2 orders of magnitude larger than lateral SSF, and both consisted mainly of pre-event water. P concentrations in SSF were high during the first 1 to 2 h (nutrient flushing) but nearly constant thereafter. This suggests that P in the soil solution was replenished fast by mineral or organic sources.
Kirsty C. Paterson, Joanna M. Cloy, Robert M. Rees, Elizabeth M. Baggs, Hugh Martineau, Dario Fornara, Andrew J. Macdonald, and Sarah Buckingham
Biogeosciences, 18, 605–620, https://doi.org/10.5194/bg-18-605-2021, https://doi.org/10.5194/bg-18-605-2021, 2021
Short summary
Short summary
Soil organic carbon sequestration across agroecosystems worldwide can contribute to mitigating the effects of climate change by reducing levels of atmospheric carbon dioxide. The maximum carbon sequestration potential is frequently estimated using the linear regression equation developed by Hassink (1997). This work examines the suitability of this equation for use in grasslands across the United Kingdom. The results highlight the need to ensure the fit of equations to the soils being studied.
Hannah Gies, Frank Hagedorn, Maarten Lupker, Daniel Montluçon, Negar Haghipour, Tessa Sophia van der Voort, and Timothy Ian Eglinton
Biogeosciences, 18, 189–205, https://doi.org/10.5194/bg-18-189-2021, https://doi.org/10.5194/bg-18-189-2021, 2021
Short summary
Short summary
Understanding controls on the persistence of organic matter in soils is essential to constrain its role in the carbon cycle. Emerging concepts suggest that the soil carbon pool is predominantly comprised of stabilized microbial residues. To test this hypothesis we isolated microbial membrane lipids from two Swiss soil profiles and measured their radiocarbon age. We find that the ages of these compounds are in the range of millenia and thus provide evidence for stabilized microbial mass in soils.
Frederick Büks, Gilles Kayser, Antonia Zieger, Friederike Lang, and Martin Kaupenjohann
Biogeosciences, 18, 159–167, https://doi.org/10.5194/bg-18-159-2021, https://doi.org/10.5194/bg-18-159-2021, 2021
Short summary
Short summary
Ultrasonication/density fractionation is a common method used to extract particulate organic matter (POM) and, recently, microplastic (MP) from soil samples. In this study, ultrasonic treatment with mechanical stress increasing from 0 to 500 J mL−1 caused comminution and a reduced recovery rate of soil-derived POMs but no such effects with MP particles. In consequence, the extraction of MP from soils is not affected by particle size and recovery rate artifacts.
Hang Wen, Pamela L. Sullivan, Gwendolyn L. Macpherson, Sharon A. Billings, and Li Li
Biogeosciences, 18, 55–75, https://doi.org/10.5194/bg-18-55-2021, https://doi.org/10.5194/bg-18-55-2021, 2021
Short summary
Short summary
Carbonate weathering is essential in regulating carbon cycle at the century timescale. Plant roots accelerate weathering by elevating soil CO2 via respiration. It however remains poorly understood how and how much rooting characteristics modify flow paths and weathering. This work indicates that deepening roots in woodlands can enhance carbonate weathering by promoting recharge and CO2–carbonate contact in the deep, carbonate-abundant subsurface.
Marcus Schiedung, Severin-Luca Bellè, Gabriel Sigmund, Karsten Kalbitz, and Samuel Abiven
Biogeosciences, 17, 6457–6474, https://doi.org/10.5194/bg-17-6457-2020, https://doi.org/10.5194/bg-17-6457-2020, 2020
Short summary
Short summary
The mobility of pyrogenic organic matter (PyOM) in soils is largely unknow, while it is a major and persistent component of the soil organic matter. With a soil column experiment, we identified that only a small proportion of PyOM can migrate through the soil, but its export is continuous. Aging and associated oxidation increase its mobility but also its retention in soils. Further, PyOM can alter the vertical mobility of native soil organic carbon during its downward migration.
Patrick Wordell-Dietrich, Anja Wotte, Janet Rethemeyer, Jörg Bachmann, Mirjam Helfrich, Kristina Kirfel, Christoph Leuschner, and Axel Don
Biogeosciences, 17, 6341–6356, https://doi.org/10.5194/bg-17-6341-2020, https://doi.org/10.5194/bg-17-6341-2020, 2020
Short summary
Short summary
The release of CO2 from soils, known as soil respiration, plays a major role in the global carbon cycle. However, the contributions of different soil depths or the sources of soil CO2 have hardly been studied. We quantified the CO2 production for different soil layers (up to 1.5 m) in three soil profiles for 2 years. We found that 90 % of CO2 production occurs in the first 30 cm of the soil profile, and that the CO2 originated from young carbon sources, as revealed by radiocarbon measurements.
Cited articles
Abdulla, H. A. N., Minor, E. C., Dias, R. F., and Hatcher, P. G.: Changes in the compound classes of dissolved organic matter along an estuarine transect: a study using FTIR and C-13 NMR, Geochim. Cosmochim. Ac., 74, 3815–3838, 2010.
Amstaetter, K., Borch, T., and Kappler, A.: Influence of humic acid imposed changes of ferrihydrite aggregation on microbial Fe(III) reduction, Geochim. Cosmochim. Ac., 85, 326–341, 2012.
Arnarson, T. S. and Keil, R. G.: Organic-mineral interactions in marine sediments studied using density fractionation and X-ray photoelectron spectroscopy, Org. Geochem., 32, 1401–1415, 2001.
Arnold, R. G., Hoffmann, M. R., Dichristina, T. J., and Picardal, F. W.: Regulation of dissimilatory Fe(III) reduction activity in Shewanella-Putrefaciens, Appl. Environ. Microb., 56, 2811–2817, 1990.
Bigham, J. M., Fitzpatrick, R. W., and Schulze, D. G.: Iron oxides, in: Soil Mineralogy with Environmental Applications, edited by: Dixon, J. B. and Schulze, D. G., SSSA Book Ser. No. 7, Soil Science Society of America, Madison, WI, 2002.
Boesen, T. and Nielsen, L. P.: Molecular Dissection of Bacterial Nanowires, Mbio, e00270-13, https://doi.org/10.1128/mBio.00270-13, 2013.
Caccavo, F., Schamberger, P. C., Keiding, K., and Nielsen, P. H.: Role of hydrophobicity in adhesion of the dissimilatory Fe(III)-reducing bacterium Shewanella alga to amorphous Fe(III) oxide, Appl. Environ. Microb., 63, 3837–3843, 1997.
Christoffersen, J. and Christoffersen, M. R.: Kinetics of dissolution of calcium-sulfate-dihydrate in water, J. Cryst. Growth, 35, 79–88, 1976.
Cismasu, A. C., Michel, F. M., Tcaciuc, A. P., Tyliszczak, T., and Brown, J. G. E.: Composition and structural aspects of naturally occurring ferrihydrite, CR Geosci., 343, 210–218, 2011.
Cornell, R. M. and Schwertmann, U.: The Iron Oxides: Structure, Properties, Reactions, Occurrences and Uses, Wiley-VCH Verlagsgesellschaft, Weinheim, 2003.
Dunnivant, F. M., Schwarzenbach, R. P., and Macalady, D. L.: Reduction of substituted nitrobenzenes in aqueous-solution containing natural organic matter, Environ. Sci. Technol., 26, 2133–2141, 1992.
Ebadi, A., Mohammadzadeh, J. S. S., and Khudiev, A.: What is the correct form of BET isotherm for modeling liquid phase adsorption? Adsorption, 15, 65–73, 2009.
Eusterhues, K., Rumpel, C., and Kögel-Knabner, I.: Organo-mineral associations in sandy acid forest soils: importance of specific surface area, iron oxides and micropores, Eur. J. Soil Sci., 56, 753–763, 2005.
Eusterhues, K., Wagner, F. E., Häusler, W., Hanzlik, M., Knicker, H., Totsche, K. U., Kögel-Knabner, I., and Schwertmann, U.: Characterization of ferrihydrite–soil organic matter coprecipitates by X-ray diffraction and Mössbauer spectroscopy, Environ. Sci. Technol., 42, 7891–7897, 2008.
Eusterhues, K., Neidhardt, J., Hädrich, A., Küsel, K., and Totsche, K. U.: Biodegradation of ferrihydrite-associated organic matter, Biogeochemistry, https://doi.org/10.1007/s10533-013-9943-0, 2014.
Eusterhues, K., Rennert, T., Knicker, H., Kögel-Knabner, I., Totsche, K. U., and Schwertmann, U.: Fractionation of organic matter due to reaction with ferrihydrite: coprecipitation versus adsorption, Environ. Sci. Technol., 45, 527–533, 2011.
Gorby, Y. A., Yanina, S., McLean, J. S., Rosso, K. M., Moyles, D., Dohnalkova, A., Beveridge, T. J., Chang, I. S., Kim, B. H., Kim, K. S., Culley, D. E., Reed, S. B., Romine, M. F., Saffarini, D. A., Hill, E. A., Shi, L., Elias, D. A., Kennedy, D. W., Pinchuk, G., Watanabe, K., Ishii, S. I., Logan, B., Nealson, K. H., and Fredrickson, J. K.: Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms, P. Natl. Acad. Sci. USA, 103, 11358–11363, 2006.
Grosvenor, A. P., Kobe, B. A., Biesinger, M. C., and McIntyre, N. S.: Investigation of multiplet splitting of Fe 2p XPS spectra and bonding in iron compounds, Surface Interface Anal., 36, 1564–1574, 2004.
Hansel, C. M., Benner, S. G., Neiss, J., Dohnalkova, A., Kukkadapu, R. K., and Fendorf, S.: Secondary mineralization pathways induced by dissimilatory iron reduction of ferrihydrite under advective flow, Geochim. Cosmochim. Ac., 67, 2977–2992, 2003.
Hansel, C. M., Benner, S. G., Nico, P., and Fendorf, S.: Structural constraints of ferric (hydr)oxides on dissimilatory iron reduction and the fate of Fe(II), Geochim. Cosmochim. Ac., 68, 3217–3229, 2004.
Henneberry, Y. K., Kraus, T. E. C., Nico, P. S., and Horwath, W. R.: Structural stability of coprecipitated natural organic matter and ferric iron under reducing conditions, Org. Geochem., 48, 81–89, 2012.
Houben, G. J.: Iron oxide incrustations in wells. Part 2: Chemical dissolution and modeling, Appl. Geochem., 18, 941–954, 2003.
Jambor, J. L. and Dutrizac, J. E.: Occurrence and constitution of natural and synthetic ferrihydrite, a widespread iron oxyhydroxide, Chem. Rev., 98, 2549–2585, 1998.
Jiang, J. and Kappler, A.: Kinetics of microbial and chemical reduction of humic substances: implications for electron shuttling, Environ. Sci. Technol., 42, 3563–3569, 2008.
Jones, A. M., Collins, R. N., Rose, J., and Waite, T. D.: The effect of silica and natural organic matter on the Fe(II)-catalysed transformation and reactivity of Fe(III) minerals, Geochim. Cosmochim. Ac., 73, 4409–4422, 2009.
Kang, S. H., Amarasiriwardena, D., and Xing, B. S.: Effect of dehydration on dicarboxylic acid coordination at goethite/water interface, Colloid Surf. A-Physicochem. Eng. Asp., 318, 275–284, 2008.
Kaiser, K. and Zech, W.: Dissolved organic matter sorption by mineral constituents of subsoil clay fractions, J. Plant Nutr. Soil Sc., 163, 531–535, 2000.
Kaiser, K., Mikutta, R., and Guggenberger, G.: Increased stability of organic matter sorbed to ferrihydrite and goethite on aging, Soil Sci. Soc. Am. J., 71, 711–719, 2007.
Karltun, E., Bain, D. C., Gustafsson, J. P., Mannerkoski, H., Murad, E., Wagner, U., Fraser, A. R., McHardy, W. J., and Starr, M.: Surface reactivity of poorly-ordered minerals in podzol B horizons, Geoderma, 94, 265–288, 2000.
Klüpfel, L., Keiluweit, M., Kleber, M., and Sander, M.: Redox Properties of Plant Biomass-Derived Black Carbon (Biochar), Environ. Sci. Technol., 48, 5601–5611, 2014.
Kotloski, N. J. and Gralnick, J. A.: Flavin electron shuttles dominate extracellular electron transfer by Shewanella oneidensis, Mbio, e00553, https://doi.org/10.1128/mBio.00553-12, 2013.
Kraemer, S. M.: Iron oxide dissolution and solubility in the presence of siderophores, Aquat. Sci., 66, 3–18, 2004.
Larsen, O. and Postma, D.: Kinetics of reductive bulk dissolution of lepidocrocite, ferrihydrite, and goethite, Geochim. Cosmochim. Ac., 65, 1367–1379, 2001.
Larsen, O., Postma, D., and Jakobsen, R.: The reactivity of iron oxides towards reductive dissolution with ascorbic acid in a shallow sandy aquifer – (Romo, Denmark), Geochim. Cosmochim. Ac., 70, 4827–4835, 2006.
Lies, D. P., Hernandez, M. E., Kappler, A., Mielke, R. E., Gralnick, J. A., and Newman, D. K.: Shewanella oneidensis MR-1 uses overlapping pathways for iron reduction at a distance and by direct contact under conditions relevant for biofilms, Appl. Environ. Microb., 71, 4414–4426, 2005.
Liu, C. X., Kota, S., Zachara, J. M., Fredrickson, J. K., and Brinkman, C. K.: Kinetic analysis of the bacterial reduction of goethite, Environ. Sci. Technol., 35, 2482–2490, 2001.
Lovley, D. R., Coates, J. D., BluntHarris, E. L., Phillips, E. J. P., and Woodward, J. C.: Humic substances as electron acceptors for microbial respiration, Nature, 382, 445–448, 1996.
Lovley, D. R., Ueki, T., Zhang, T., Malvankar, N. S., Shrestha, P. M., Flanagan, K. A., Aklujkar, M., Butler, J. E., Giloteaux, L., Rotaru, A.-E., Holmes, D. E., Franks, A. E., Orellana, R., Risso, C., and Nevin, K. P.: Geobacter: the microbe electric's physiology, ecology, and practical applications, in: Advances in Microbial Physiology, vol. 59, edited by: Poole, R. K., 2011.
Malvankar, N. S., Vargas, M., Nevin, K. P., Franks, A. E., Leang, C., Kim, B.-C., Inoue, K., Mester, T., Covalla, S. F., Johnson, J. P., Rotello, V. M., Tuominen, M. T., and Lovley, D. R.: Tunable metallic-like conductivity in microbial nanowire networks, Nat. Nanotechnol., 6, 573–579, 2011.
Malvankar, N. S., Tuominen, M. T., and Lovley, D. R.: Comment on "On electrical conductivity of microbial nanowires and biofilms" by Strycharz-Glaven et al. (2011), Energ. Environ. Sci., 5, 6247–6249, 2012.
Marsili, E., Baron, D. B., Shikhare, I. D., Coursolle, D., Gralnick, J. A., and Bond, D. R.: Shewanella secretes flavins that mediate extracellular electron transfer, P. Natl. Acad. Sci. USA, 105, 3968–3973, 2008.
McIntyre, N. S. and Zetaruk, D. G.: X-Ray Photoeleectron Spectroscopic studies of iron oxides, Anal. Chem., 49, 1521–1529, 1977.
Mikutta, C., Mikutta, R., Bonneville, S., Wagner, F., Voegelin, A., Christl, I., and Kretzschmar, R.: Synthetic coprecipitates of exopolysaccharides and ferrihydrite. Part I: Characterization, Geochim. Cosmochim. Ac., 72, 1111–1127, 2008.
Nevin, K. P. and Lovley, D. R.: Lack of production of electron-shuttling compounds or solubilization of Fe(III) during reduction of insoluble Fe(III) oxide by Geobacter metallireducens, Appl. Environ. Microb., 66, 2248–2251, 2000.
Nevin, K. P. and Lovley, D. R.: Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans, Appl. Environ. Microb., 68, 2294–2299, 2002.
Pédrot, M., Le Boudec, A., Davranche, M., Dia, A., and Henin, O.: How does organic matter constrain the nature, size and availability of Fe nanoparticles for biological reduction? J. Colloid Interf. Sci., 359, 75–85, 2011.
Persson, P. and Axe, K.: Adsorption of oxalate and malonate at the water-goethite interface: molecular surface speciation from IR spectroscopy, Geochim. Cosmochim. Ac., 69, 541–552, 2005.
Piepenbrock, A., Schröder, C., and Kappler, A.: Electron transfer from humic substances to biogenic an abiogenic Fe(III) oxyhydroxide minerals, Environ. Sci. Technol., 48, 1656–1664, 2014.
Postma, D.: The reactivity of iron-oxides in sediments – a kinetic approach, Geochim. Cosmochim. Ac., 57, 5027–5034, 1993.
Regelink, I. C., Weng, L., Koopmans, G. F., and Van Riemsdijk, W. H.: Asymmetric flow field-flow fractionation as a new approach to analyse iron-(hydr)oxide nanoparticles in soil extracts, Geoderma, 202, 134–141, 2013.
Reguera, G., McCarthy, K. D., Mehta, T., Nicoll, J. S., Tuominen, M. T., and Lovley, D. R.: Extracellular electron transfer via microbial nanowires, Nature, 435, 1098–1101, 2005.
Roden, E. E.: Analysis of long-term bacterial vs. chemical Fe(III) oxide reduction kinetics, Geochim. Cosmochim. Ac., 68, 3205–3216, 2004.
Roden, E. E. and Urrutia, M. M.: Ferrous iron removal promotes microbial reduction of crystalline iron(III) oxides, Environ. Sci. Technol., 33, 2492–2492, 1999.
Roden, E. E., Kappler, A., Bauer, I., Jiang, J., Paul, A., Stoesser, R., Konishi, H., and Xu, H. F.: Extracellular electron transfer through microbial reduction of solid-phase humic substances, Nat. Geosci., 3, 417–421, 2010.
Royer, R. A., Burgos, W. D., Fisher, A. S., Jeon, B. H., Unz, R. F., and Dempsey, B. A.: Enhancement of hematite bioreduction by natural organic matter, Environ. Sci. Technol., 36, 2897–2904, 2002.
Schwertmann, U.: Inhibitory effect of soil organic matter on crystallization of amorphous ferric hydroxide, Nature, 212, 645–646, 1966.
Schwertmann, U.: Influence of various simple organic anions on formation of goethite and hematite from amorphous ferric hydroxide, Geoderma, 3, 207–214, 1970.
Schwertmann, U., Wagner, F., and Knicker, H.: Ferrihydrite-humic associations: magnetic hyperfine interactions, Soil Sci. Soc. Am. J., 69, 1009–1015, 2005.
Scott, D. T., McKnight, D. M., Blunt-Harris, E. L., Kolesar, S. E., and Lovley, D. R.: Quinone moieties act as electron acceptors in the reduction of humic substances by humics-reducing microorganisms, Environ. Sci. Technol., 32, 2984-2989, 1998.
Seah, M. P. and Dench, W. A.: Quantitative electron spectroscopy of surfaces: a standard data base for electron inelastic mean free paths in solids, Surf. Interface Anal., 1, 2–11, 1979.
Shimizu, M., Zhou, J., Schroeder, C., Obst, M., Kappler, A., and Borch, T.: Dissimilatory reduction and transformation of ferrihydrite-humic acid coprecipitates, Environ. Sci. Technol., 47, 13375–13384, 2013.
Straub, K. L., Hanzlik, M., and Buchholz-Cleven, B. E. E.: The use of biologically produced ferrihydrite for the isolation of novel iron-reducing bacteria, System. Appl. Microbiol., 21, 442–449, 1998.
Straub, K. L. and Buchholz-Cleven, B. E. E.: Geobacter bremensis sp. nov. and Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria, Int. J. Syst. Evol. Micr., 51, 1805–1808, 2001.
Stumm, W.: Reactivity at the mineral-water interface: Dissolution and inhibition, Colloids and Surfaces A – Physicochemical and Engineering Aspects, 120, 143–166, 1997.
Tamura, H., Goto, K., Yotsuyan T., and Nagayama, M.: Spectrophotometric determination of iron(II) with 1,10-phenanthroline in presence of large amounts of iron(III), Talanta, 21, 314–318, 1974.
Thompson, A., Chadwick, O. A., Rancourt, D. G., and Chorover, J.: Iron-oxide crystallinity increases during soil redox oscillations, Geochim. Cosmochim. Ac., 70, 1710–1727, 2006.
Tipping, E.: The adsorption of aquatic humic substances by iron-oxides, Geochim. Cosmochim. Ac., 45, 191–199, 1981.
Torn, M. S., Trumbore, S. E., Chadwick, O. A., Vitousek, P. M., and Hendricks, D. M.: Mineral control of soil organic carbon storage and turnover, Nature, 389, 170–173, 1997.
von Canstein, H., Ogawa, J., Shimizu, S., and Lloyd, J. R.: Secretion of flavins by Shewanella species and their role in extracellular electron transfer, Appl. Environ. Microb., 74, 615–623, 2008.
van der Zee, C., Roberts, D. R., Rancourt, D. G., and Slomp, C. P.: Nanogoethite is the dominant reactive oxyhydroxide phase in lake and marine sediments, Geology, 31, 993–996, 2003.
Yee, N., Shaw, S., Benning, L. G., and Nguyen, T. H.: The rate of ferrihydrite transformation to goethite via the Fe(II) pathway, Am. Mineral., 91, 92–96, 2006.
