Articles | Volume 11, issue 16
https://doi.org/10.5194/bg-11-4321-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-4321-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
19 Aug 2014
Research article |
| 19 Aug 2014
Diverse coral communities in mangrove habitats suggest a novel refuge from climate change
K. K. Yates
US Geological Survey, Coastal and Marine Science Center, St Petersburg, Florida 33701, USA
C. S. Rogers
US Geological Survey, Southeast Ecological Science Center, St John, US Virgin Islands 00830, USA
J. J. Herlan
US Geological Survey, Southeast Ecological Science Center, St John, US Virgin Islands 00830, USA
now at: Universidad Católica del Norte, Larrondo 1281, Coquimbo, Chile
G. R. Brooks
Eckerd College, Galbraith Marine Science Laboratory, St. Petersburg, Florida 33711, USA
N. A. Smiley
US Geological Survey, Coastal and Marine Science Center, St Petersburg, Florida 33701, USA
R. A. Larson
Eckerd College, Galbraith Marine Science Laboratory, St. Petersburg, Florida 33711, USA
Related authors
Kimberly Kaye Yates, Zachery Fehr, Selena Johnson, and David Zawada
EGUsphere, https://doi.org/10.5194/egusphere-2023-3000, https://doi.org/10.5194/egusphere-2023-3000, 2023
Short summary
Short summary
Global understanding of storm-driven sediment transport along coral reefs and its impact to species and habitats is limited. Measurement of seafloor elevation- and volume-change due to a category 4 hurricane showed rapid burial of coral reef habitats and migration of large seafloor features due to the storm, and post-storm erosion rates two orders of magnitude greater than historical rates, indicating areas of seafloor instability that could be less suitable for restoration of benthic species.
Christopher S. Moore, Robert H. Byrne, and Kimberly K. Yates
EGUsphere, https://doi.org/10.5194/egusphere-2022-1493, https://doi.org/10.5194/egusphere-2022-1493, 2023
Preprint archived
Short summary
Short summary
This paper presents time series measurements of pH, dissolved inorganic carbon, and total alkalinity for organic rich estuarine water. The efficacy of sample preservation is examined by comparing results obtained with and without additions of the HgCl2. Our results show that addition of HgCl2 affects titration alkalinity and subsequently pH. Accurate analyses can be achieved using improvements in sample preservation techniques for carbonate system measurements in organic-rich estuarine waters.
Nancy G. Prouty, Kimberly K. Yates, Nathan Smiley, Chris Gallagher, Olivia Cheriton, and Curt D. Storlazzi
Biogeosciences, 15, 2467–2480, https://doi.org/10.5194/bg-15-2467-2018, https://doi.org/10.5194/bg-15-2467-2018, 2018
Short summary
Short summary
Coral reefs provide critical shoreline protection and important services, such as marine habitat, tourism, fishing, and recreation. However, coral reefs are being threatened by global climate change. If we are to understand how reefs will response to climate change, we must also understand how local conditions may impact the reefs. Our study offers a first glimpse into how human inputs of nutrients might add an additional stressor to reef health.
Kimberly K. Yates, David G. Zawada, Nathan A. Smiley, and Ginger Tiling-Range
Biogeosciences, 14, 1739–1772, https://doi.org/10.5194/bg-14-1739-2017, https://doi.org/10.5194/bg-14-1739-2017, 2017
Short summary
Short summary
We report regional-scale erosion of coral reef ecosystems in the Atlantic, Caribbean, and Pacific oceans determined by measuring changes in seafloor elevation. The magnitude of seafloor elevation loss has increased local sea level rise, causing water depths not predicted until near 2100, placing coastal communities at elevated and accelerating risk from hazards such as waves, storms, and tsunamis. Our results have broad implications for coastal resource and safety management.
Kimberly Kaye Yates, Zachery Fehr, Selena Johnson, and David Zawada
EGUsphere, https://doi.org/10.5194/egusphere-2023-3000, https://doi.org/10.5194/egusphere-2023-3000, 2023
Short summary
Short summary
Global understanding of storm-driven sediment transport along coral reefs and its impact to species and habitats is limited. Measurement of seafloor elevation- and volume-change due to a category 4 hurricane showed rapid burial of coral reef habitats and migration of large seafloor features due to the storm, and post-storm erosion rates two orders of magnitude greater than historical rates, indicating areas of seafloor instability that could be less suitable for restoration of benthic species.
Christopher S. Moore, Robert H. Byrne, and Kimberly K. Yates
EGUsphere, https://doi.org/10.5194/egusphere-2022-1493, https://doi.org/10.5194/egusphere-2022-1493, 2023
Preprint archived
Short summary
Short summary
This paper presents time series measurements of pH, dissolved inorganic carbon, and total alkalinity for organic rich estuarine water. The efficacy of sample preservation is examined by comparing results obtained with and without additions of the HgCl2. Our results show that addition of HgCl2 affects titration alkalinity and subsequently pH. Accurate analyses can be achieved using improvements in sample preservation techniques for carbonate system measurements in organic-rich estuarine waters.
Nancy G. Prouty, Kimberly K. Yates, Nathan Smiley, Chris Gallagher, Olivia Cheriton, and Curt D. Storlazzi
Biogeosciences, 15, 2467–2480, https://doi.org/10.5194/bg-15-2467-2018, https://doi.org/10.5194/bg-15-2467-2018, 2018
Short summary
Short summary
Coral reefs provide critical shoreline protection and important services, such as marine habitat, tourism, fishing, and recreation. However, coral reefs are being threatened by global climate change. If we are to understand how reefs will response to climate change, we must also understand how local conditions may impact the reefs. Our study offers a first glimpse into how human inputs of nutrients might add an additional stressor to reef health.
Kimberly K. Yates, David G. Zawada, Nathan A. Smiley, and Ginger Tiling-Range
Biogeosciences, 14, 1739–1772, https://doi.org/10.5194/bg-14-1739-2017, https://doi.org/10.5194/bg-14-1739-2017, 2017
Short summary
Short summary
We report regional-scale erosion of coral reef ecosystems in the Atlantic, Caribbean, and Pacific oceans determined by measuring changes in seafloor elevation. The magnitude of seafloor elevation loss has increased local sea level rise, causing water depths not predicted until near 2100, placing coastal communities at elevated and accelerating risk from hazards such as waves, storms, and tsunamis. Our results have broad implications for coastal resource and safety management.
Related subject area
Biogeochemistry: Coastal Ocean
Hypoxia also occurs in small highly turbid estuaries: the example of the Charente (Bay of Biscay)
Seasonality and response of ocean acidification and hypoxia to major environmental anomalies in the southern Salish Sea, North America (2014–2018)
Oceanographic processes driving low-oxygen conditions inside Patagonian fjords
Above- and belowground plant mercury dynamics in a salt marsh estuary in Massachusetts, USA
Variability and drivers of carbonate chemistry at shellfish aquaculture sites in the Salish Sea, British Columbia
Unusual Hemiaulus bloom influences ocean productivity in Northeastern US Shelf waters
Insights into carbonate environmental conditions in the Chukchi Sea
UAV approaches for improved mapping of vegetation cover and estimation of carbon storage of small saltmarshes: examples from Loch Fleet, northeast Scotland
Iron “ore” nothing: benthic iron fluxes from the oxygen-deficient Santa Barbara Basin enhance phytoplankton productivity in surface waters
Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland
Uncertainty in the evolution of northwestern North Atlantic circulation leads to diverging biogeochemical projections
The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Ocean alkalinity enhancement using sodium carbonate salts does not impact Fe dynamics in a mesocosm experiment
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
Picoplanktonic methane production in eutrophic surface waters
Influence of Ocean Alkalinity Enhancement with Olivine or Steel Slag on a Coastal Plankton Community in Tasmania
Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
Influence of manganese cycling on alkalinity in the redox stratified water column of Chesapeake Bay
Estuarine flocculation dynamics of organic carbon and metals from boreal acid sulfate soils
Drivers of particle sinking velocities in the Peruvian upwelling system
Vertical mixing alleviates autumnal oxygen deficiency in the central North Sea
Intra-scenario variability of trends and controls of near-bed oxygen concentration on the Northwest European Continental Shelf under climate change
Impacts and uncertainties of climate-induced changes in watershed inputs on estuarine hypoxia
Considerations for hypothetical carbon dioxide removal via alkalinity addition in the Amazon River watershed
High metabolism and periodic hypoxia associated with drifting macrophyte detritus in the shallow subtidal Baltic Sea
Production and accumulation of reef framework by calcifying corals and macroalgae on a remote Indian Ocean cay
Zooplankton community succession and trophic links during a mesocosm experiment in the coastal upwelling off Callao Bay (Peru)
Temporal and spatial evolution of bottom-water hypoxia in the St Lawrence estuarine system
Significant nutrient consumption in the dark subsurface layer during a diatom bloom: a case study on Funka Bay, Hokkaido, Japan
Contrasts in dissolved, particulate, and sedimentary organic carbon from the Kolyma River to the East Siberian Shelf
Sediment quality assessment in an industrialized Greek coastal marine area (western Saronikos Gulf)
Limits and CO2 equilibration of near-coast alkalinity enhancement
Role of phosphorus in the seasonal deoxygenation of the East China Sea shelf
Interannual variability of the initiation of the phytoplankton growing period in two French coastal ecosystems
Spatio-temporal distribution, photoreactivity and environmental control of dissolved organic matter in the sea-surface microlayer of the eastern marginal seas of China
Metabolic alkalinity release from large port facilities (Hamburg, Germany) and impact on coastal carbon storage
A Numerical reassessment of the Gulf of Mexico carbon system in connection with the Mississippi River and global ocean
Observed and projected global warming pressure on coastal hypoxia
Benthic alkalinity fluxes from coastal sediments of the Baltic and North seas: comparing approaches and identifying knowledge gaps
Investigating the effect of nickel concentration on phytoplankton growth to assess potential side-effects of ocean alkalinity enhancement
Unprecedented summer hypoxia in southern Cape Cod Bay: an ecological response to regional climate change?
Interannual variabilities, long-term trends, and regulating factors of low-oxygen conditions in the coastal waters off Hong Kong
Causes of the extensive hypoxia in the Gulf of Riga in 2018
Trawling effects on biogeochemical processes are mediated by fauna in high-energy biogenic-reef-inhabited coastal sediments
Drought recorded by Ba∕Ca in coastal benthic foraminifera
A nitrate budget of the Bohai Sea based on an isotope mass balance model
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
Short summary
Short summary
Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
Short summary
Short summary
We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
Short summary
Short summary
The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
Short summary
Short summary
The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
Short summary
Short summary
Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
Short summary
Short summary
The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
Short summary
Short summary
Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
Short summary
Short summary
Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
Short summary
Short summary
The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
Short summary
Short summary
Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
Short summary
Short summary
We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
Short summary
Short summary
We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
Short summary
Short summary
Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
Short summary
Short summary
We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
EGUsphere, https://doi.org/10.5194/egusphere-2023-2868, https://doi.org/10.5194/egusphere-2023-2868, 2023
Short summary
Short summary
In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called Ocean Alkalinization Enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
Short summary
Short summary
Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
Short summary
Short summary
This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Sandy E. Tenorio and Laura Farías
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-185, https://doi.org/10.5194/bg-2023-185, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Time series studies show that CH4 is highly dynamic on the coastal ocean surface and that planktonic communities are linked to CH4 accumulation as is found in coastal upwelling off Central Chile. We’ve identified the crucial role of picoplankton (>3μm) in CH4 recycling, especially with the addition of methylated substrates (TMA and MPn) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding accurate CH4 emissions estimates.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
EGUsphere, https://doi.org/10.5194/egusphere-2023-2120, https://doi.org/10.5194/egusphere-2023-2120, 2023
Short summary
Short summary
Ocean alkalinity enhancement (OAE) aims to increase atmospheric CO2 sequestration in the oceans by spreading ground alkaline materials into the ocean. To assess the environmental impacts of OAE, we used 53 L microcosms to test how coastal plankton communities respond to OAE with olivine or steel slag as alkalinity sources. Overall, steel slag is much more efficient for CO2 removal than olivine and appears to be induce less changes in the phytoplankton and zooplankton communities.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
Short summary
Short summary
Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
Short summary
Short summary
The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
Joonas J. Virtasalo, Peter Österholm, and Eero Asmala
Biogeosciences, 20, 2883–2901, https://doi.org/10.5194/bg-20-2883-2023, https://doi.org/10.5194/bg-20-2883-2023, 2023
Short summary
Short summary
We mixed acidic metal-rich river water from acid sulfate soils and seawater in the laboratory to study the flocculation of dissolved metals and organic matter in estuaries. Al and Fe flocculated already at a salinity of 0–2 to large organic flocs (>80 µm size). Precipitation of Al and Fe hydroxide flocculi (median size 11 µm) began when pH exceeded ca. 5.5. Mn transferred weakly to Mn hydroxides and Co to the flocs. Up to 50 % of Cu was associated with the flocs, irrespective of seawater mixing.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
Short summary
Short summary
The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
Charlotte Williams, Tom Hull, Matthew Palmer, Claire Mahaffey, Naomi Greenwood, Jan Kaiser, and Matthew Toberman
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-100, https://doi.org/10.5194/bg-2023-100, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data, but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reach ecologically low levels.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
EGUsphere, https://doi.org/10.5194/egusphere-2023-1049, https://doi.org/10.5194/egusphere-2023-1049, 2023
Short summary
Short summary
In this work we looked at the projected change in bottom water oxygen content in an ensemble of ocean climate change models of the North Western European Shelf. What emerged is that, 1. oxygen decreases in all models, 2. in the models with the most warming, a change in circulation patterns is tied to the emergence of low oxygen hotspots in the Eastern North Sea, and, 3. in relatively shallow coastal areas increasing in primary production partially mitigates oxygen decline.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
Short summary
Short summary
Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Linquan Mu, Jaime B. Palter, and Hongjie Wang
Biogeosciences, 20, 1963–1977, https://doi.org/10.5194/bg-20-1963-2023, https://doi.org/10.5194/bg-20-1963-2023, 2023
Short summary
Short summary
Enhancing ocean alkalinity accelerates carbon dioxide removal from the atmosphere. We hypothetically added alkalinity to the Amazon River and examined the increment of the carbon uptake by the Amazon plume. We also investigated the minimum alkalinity addition in which this perturbation at the river mouth could be detected above the natural variability.
Karl M. Attard, Anna Lyssenko, and Iván F. Rodil
Biogeosciences, 20, 1713–1724, https://doi.org/10.5194/bg-20-1713-2023, https://doi.org/10.5194/bg-20-1713-2023, 2023
Short summary
Short summary
Aquatic plants produce a large amount of organic matter through photosynthesis that, following erosion, is deposited on the seafloor. In this study, we show that plant detritus can trigger low-oxygen conditions (hypoxia) in shallow coastal waters, making conditions challenging for most marine animals. We propose that the occurrence of hypoxia may be underestimated because measurements typically do not consider the region closest to the seafloor, where detritus accumulates.
M. James McLaughlin, Cindy Bessey, Gary A. Kendrick, John Keesing, and Ylva S. Olsen
Biogeosciences, 20, 1011–1026, https://doi.org/10.5194/bg-20-1011-2023, https://doi.org/10.5194/bg-20-1011-2023, 2023
Short summary
Short summary
Coral reefs face increasing pressures from environmental change at present. The coral reef framework is produced by corals and calcifying algae. The Kimberley region of Western Australia has escaped land-based anthropogenic impacts. Specimens of the dominant coral and algae were collected from Browse Island's reef platform and incubated in mesocosms to measure calcification and production patterns of oxygen. This study provides important data on reef building and climate-driven effects.
Patricia Ayón Dejo, Elda Luz Pinedo Arteaga, Anna Schukat, Jan Taucher, Rainer Kiko, Helena Hauss, Sabrina Dorschner, Wilhelm Hagen, Mariona Segura-Noguera, and Silke Lischka
Biogeosciences, 20, 945–969, https://doi.org/10.5194/bg-20-945-2023, https://doi.org/10.5194/bg-20-945-2023, 2023
Short summary
Short summary
Ocean upwelling regions are highly productive. With ocean warming, severe changes in upwelling frequency and/or intensity and expansion of accompanying oxygen minimum zones are projected. In a field experiment off Peru, we investigated how different upwelling intensities affect the pelagic food web and found failed reproduction of dominant zooplankton. The changes projected could severely impact the reproductive success of zooplankton communities and the pelagic food web in upwelling regions.
Mathilde Jutras, Alfonso Mucci, Gwenaëlle Chaillou, William A. Nesbitt, and Douglas W. R. Wallace
Biogeosciences, 20, 839–849, https://doi.org/10.5194/bg-20-839-2023, https://doi.org/10.5194/bg-20-839-2023, 2023
Short summary
Short summary
The deep waters of the lower St Lawrence Estuary and gulf have, in the last decades, experienced a strong decline in their oxygen concentration. Below 65 µmol L-1, the waters are said to be hypoxic, with dire consequences for marine life. We show that the extent of the hypoxic zone shows a seven-fold increase in the last 20 years, reaching 9400 km2 in 2021. After a stable period at ~ 65 µmol L⁻¹ from 1984 to 2019, the oxygen level also suddenly decreased to ~ 35 µmol L-1 in 2020.
Sachi Umezawa, Manami Tozawa, Yuichi Nosaka, Daiki Nomura, Hiroji Onishi, Hiroto Abe, Tetsuya Takatsu, and Atsushi Ooki
Biogeosciences, 20, 421–438, https://doi.org/10.5194/bg-20-421-2023, https://doi.org/10.5194/bg-20-421-2023, 2023
Short summary
Short summary
We conducted repetitive observations in Funka Bay, Japan, during the spring bloom 2019. We found nutrient concentration decreases in the dark subsurface layer during the bloom. Incubation experiments confirmed that diatoms could consume nutrients at a substantial rate, even in darkness. We concluded that the nutrient reduction was mainly caused by nutrient consumption by diatoms in the dark.
Dirk Jong, Lisa Bröder, Tommaso Tesi, Kirsi H. Keskitalo, Nikita Zimov, Anna Davydova, Philip Pika, Negar Haghipour, Timothy I. Eglinton, and Jorien E. Vonk
Biogeosciences, 20, 271–294, https://doi.org/10.5194/bg-20-271-2023, https://doi.org/10.5194/bg-20-271-2023, 2023
Short summary
Short summary
With this study, we want to highlight the importance of studying both land and ocean together, and water and sediment together, as these systems function as a continuum, and determine how organic carbon derived from permafrost is broken down and its effect on global warming. Although on the one hand it appears that organic carbon is removed from sediments along the pathway of transport from river to ocean, it also appears to remain relatively ‘fresh’, despite this removal and its very old age.
Georgia Filippi, Manos Dassenakis, Vasiliki Paraskevopoulou, and Konstantinos Lazogiannis
Biogeosciences, 20, 163–189, https://doi.org/10.5194/bg-20-163-2023, https://doi.org/10.5194/bg-20-163-2023, 2023
Short summary
Short summary
The pollution of the western Saronikos Gulf from heavy metals has been examined through the study of marine sediment cores. It is a deep gulf (maximum depth 440 m) near Athens affected by industrial and volcanic activity. Eight cores were received from various stations and depths and analysed for their heavy metal content and geochemical characteristics. The results were evaluated by using statistical methods, environmental indicators and comparisons with old data.
Jing He and Michael D. Tyka
Biogeosciences, 20, 27–43, https://doi.org/10.5194/bg-20-27-2023, https://doi.org/10.5194/bg-20-27-2023, 2023
Short summary
Short summary
Recently, ocean alkalinity enhancement (OAE) has gained interest as a scalable way to address the urgent need for negative CO2 emissions. In this paper we examine the capacity of different coastlines to tolerate alkalinity enhancement and the time scale of CO2 uptake following the addition of a given quantity of alkalinity. The results suggest that OAE has significant potential and identify specific favorable and unfavorable coastlines for its deployment.
Arnaud Laurent, Haiyan Zhang, and Katja Fennel
Biogeosciences, 19, 5893–5910, https://doi.org/10.5194/bg-19-5893-2022, https://doi.org/10.5194/bg-19-5893-2022, 2022
Short summary
Short summary
The Changjiang is the main terrestrial source of nutrients to the East China Sea (ECS). Nutrient delivery to the ECS has been increasing since the 1960s, resulting in low oxygen (hypoxia) during phytoplankton decomposition in summer. River phosphorus (P) has increased less than nitrogen, and therefore, despite the large nutrient delivery, phytoplankton growth can be limited by the lack of P. Here, we investigate this link between P limitation, phytoplankton production/decomposition, and hypoxia.
Coline Poppeschi, Guillaume Charria, Anne Daniel, Romaric Verney, Peggy Rimmelin-Maury, Michaël Retho, Eric Goberville, Emilie Grossteffan, and Martin Plus
Biogeosciences, 19, 5667–5687, https://doi.org/10.5194/bg-19-5667-2022, https://doi.org/10.5194/bg-19-5667-2022, 2022
Short summary
Short summary
This paper aims to understand interannual changes in the initiation of the phytoplankton growing period (IPGP) in the current context of global climate changes over the last 20 years. An important variability in the timing of the IPGP is observed with a trend towards a later IPGP during this last decade. The role and the impact of extreme events (cold spells, floods, and wind burst) on the IPGP is also detailed.
Lin Yang, Jing Zhang, Anja Engel, and Gui-Peng Yang
Biogeosciences, 19, 5251–5268, https://doi.org/10.5194/bg-19-5251-2022, https://doi.org/10.5194/bg-19-5251-2022, 2022
Short summary
Short summary
Enrichment factors of dissolved organic matter (DOM) in the eastern marginal seas of China exhibited a significant spatio-temporal variation. Photochemical and enrichment processes co-regulated DOM enrichment in the sea-surface microlayer (SML). Autochthonous DOM was more frequently enriched in the SML than terrestrial DOM. DOM in the sub-surface water exhibited higher aromaticity than that in the SML.
Mona Norbisrath, Johannes Pätsch, Kirstin Dähnke, Tina Sanders, Gesa Schulz, Justus E. E. van Beusekom, and Helmuth Thomas
Biogeosciences, 19, 5151–5165, https://doi.org/10.5194/bg-19-5151-2022, https://doi.org/10.5194/bg-19-5151-2022, 2022
Short summary
Short summary
Total alkalinity (TA) regulates the oceanic storage capacity of atmospheric CO2. TA is also metabolically generated in estuaries and influences coastal carbon storage through its inflows. We used water samples and identified the Hamburg port area as the one with highest TA generation. Of the overall riverine TA load, 14 % is generated within the estuary. Using a biogeochemical model, we estimated potential effects on the coastal carbon storage under possible anthropogenic and climate changes.
Le Zhang and Z. George Xue
Biogeosciences, 19, 4589–4618, https://doi.org/10.5194/bg-19-4589-2022, https://doi.org/10.5194/bg-19-4589-2022, 2022
Short summary
Short summary
We adopt a high-resolution carbon model for the Gulf of Mexico (GoM) and calculate the decadal trends of important carbon system variables in the GoM from 2001 to 2019. The GoM surface CO2 values experienced a steady increase over the past 2 decades, and the ocean surface pH is declining. Although carbonate saturation rates remain supersaturated with aragonite, they show a slightly decreasing trend. The northern GoM is a stronger carbon sink than we thought.
Michael M. Whitney
Biogeosciences, 19, 4479–4497, https://doi.org/10.5194/bg-19-4479-2022, https://doi.org/10.5194/bg-19-4479-2022, 2022
Short summary
Short summary
Coastal hypoxia is a major environmental problem of increasing severity. The 21st-century projections analyzed indicate global coastal waters will warm and experience rapid declines in oxygen. The forecasted median coastal trends for increasing sea surface temperature and decreasing oxygen capacity are 48 % and 18 % faster than the rates observed over the last 4 decades. Existing hypoxic areas are expected to worsen, and new hypoxic areas likely will emerge under these warming-related pressures.
Bryce Van Dam, Nele Lehmann, Mary A. Zeller, Andreas Neumann, Daniel Pröfrock, Marko Lipka, Helmuth Thomas, and Michael Ernst Böttcher
Biogeosciences, 19, 3775–3789, https://doi.org/10.5194/bg-19-3775-2022, https://doi.org/10.5194/bg-19-3775-2022, 2022
Short summary
Short summary
We quantified sediment–water exchange at shallow sites in the North and Baltic seas. We found that porewater irrigation rates in the former were approximately twice as high as previously estimated, likely driven by relatively high bioirrigative activity. In contrast, we found small net fluxes of alkalinity, ranging from −35 µmol m−2 h−1 (uptake) to 53 µmol m−2 h−1 (release). We attribute this to low net denitrification, carbonate mineral (re-)precipitation, and sulfide (re-)oxidation.
Jiaying Abby Guo, Robert Strzepek, Anusuya Willis, Aaron Ferderer, and Lennart Thomas Bach
Biogeosciences, 19, 3683–3697, https://doi.org/10.5194/bg-19-3683-2022, https://doi.org/10.5194/bg-19-3683-2022, 2022
Short summary
Short summary
Ocean alkalinity enhancement is a CO2 removal method with significant potential, but it can lead to a perturbation of the ocean with trace metals such as nickel. This study tested the effect of increasing nickel concentrations on phytoplankton growth and photosynthesis. We found that the response to nickel varied across the 11 phytoplankton species tested here, but the majority were rather insensitive. We note, however, that responses may be different under other experimental conditions.
Malcolm E. Scully, W. Rockwell Geyer, David Borkman, Tracy L. Pugh, Amy Costa, and Owen C. Nichols
Biogeosciences, 19, 3523–3536, https://doi.org/10.5194/bg-19-3523-2022, https://doi.org/10.5194/bg-19-3523-2022, 2022
Short summary
Short summary
For two consecutive summers, the bottom waters in southern Cape Cod Bay became severely depleted of dissolved oxygen. Low oxygen levels in bottom waters have never been reported in this area before, and this unprecedented occurrence is likely the result of a new algae species that recently began blooming during the late-summer months. We present data suggesting that blooms of this new species are the result of regional climate change including warmer waters and changes in summer winds.
Zheng Chen, Bin Wang, Chuang Xu, Zhongren Zhang, Shiyu Li, and Jiatang Hu
Biogeosciences, 19, 3469–3490, https://doi.org/10.5194/bg-19-3469-2022, https://doi.org/10.5194/bg-19-3469-2022, 2022
Short summary
Short summary
Deterioration of low-oxygen conditions in the coastal waters off Hong Kong was revealed by monitoring data over two decades. The declining wind forcing and the increasing nutrient input contributed significantly to the areal expansion and intense deterioration of low-oxygen conditions. Also, the exacerbated eutrophication drove a shift in the dominant source of organic matter from terrestrial inputs to in situ primary production, which has probably led to an earlier onset of hypoxia in summer.
Stella-Theresa Stoicescu, Jaan Laanemets, Taavi Liblik, Māris Skudra, Oliver Samlas, Inga Lips, and Urmas Lips
Biogeosciences, 19, 2903–2920, https://doi.org/10.5194/bg-19-2903-2022, https://doi.org/10.5194/bg-19-2903-2022, 2022
Short summary
Short summary
Coastal basins with high input of nutrients often suffer from oxygen deficiency. In summer 2018, the extent of oxygen depletion was exceptional in the Gulf of Riga. We analyzed observational data and found that extensive oxygen deficiency appeared since the water layer close to the seabed, where oxygen is consumed, was separated from the surface layer. The problem worsens if similar conditions restricting vertical transport of oxygen occur more frequently in the future.
Justin C. Tiano, Jochen Depestele, Gert Van Hoey, João Fernandes, Pieter van Rijswijk, and Karline Soetaert
Biogeosciences, 19, 2583–2598, https://doi.org/10.5194/bg-19-2583-2022, https://doi.org/10.5194/bg-19-2583-2022, 2022
Short summary
Short summary
This study gives an assessment of bottom trawling on physical, chemical, and biological characteristics in a location known for its strong currents and variable habitats. Although trawl gears only removed the top 1 cm of the seabed surface, impacts on reef-building tubeworms significantly decreased carbon and nutrient cycling. Lighter trawls slightly reduced the impact on fauna and nutrients. Tubeworms were strongly linked to biogeochemical and faunal aspects before but not after trawling.
Inda Brinkmann, Christine Barras, Tom Jilbert, Tomas Næraa, K. Mareike Paul, Magali Schweizer, and Helena L. Filipsson
Biogeosciences, 19, 2523–2535, https://doi.org/10.5194/bg-19-2523-2022, https://doi.org/10.5194/bg-19-2523-2022, 2022
Short summary
Short summary
The concentration of the trace metal barium (Ba) in coastal seawater is a function of continental input, such as riverine discharge. Our geochemical records of the severely hot and dry year 2018, and following wet year 2019, reveal that prolonged drought imprints with exceptionally low Ba concentrations in benthic foraminiferal calcium carbonates of coastal sediments. This highlights the potential of benthic Ba / Ca to trace past climate extremes and variability in coastal marine records.
Shichao Tian, Birgit Gaye, Jianhui Tang, Yongming Luo, Wenguo Li, Niko Lahajnar, Kirstin Dähnke, Tina Sanders, Tianqi Xiong, Weidong Zhai, and Kay-Christian Emeis
Biogeosciences, 19, 2397–2415, https://doi.org/10.5194/bg-19-2397-2022, https://doi.org/10.5194/bg-19-2397-2022, 2022
Short summary
Short summary
We constrain the nitrogen budget and in particular the internal sources and sinks of nitrate in the Bohai Sea by using a mass-based and dual stable isotope approach based on δ15N and δ18O of nitrate. Based on available mass fluxes and isotope data an updated nitrogen budget is proposed. Compared to previous estimates, it is more complete and includes the impact of the interior cycle (nitrification) on the nitrate pool. The main external nitrogen sources are rivers contributing 19.2 %–25.6 %.
Cited articles
Anthony, K. R. N., Kleypas, J. A., and Gattuso, J.-P.: Coral reefs modify their seawater carbon chemistry – implications for impacts of ocean acidification, Glob. Change Biol., 17, 3655-3666, 2011.
Atkinson, A. and Miller, W. J.: Coral relative abundance at index sites in Virgin Islands National Park, Generic Multimedia-2211046, https://irma.nps.gov/App/Reference/Profile/2211046, 2014.
Ayoub, L. M., Hallock, P., Coble, P. G., and Bell, S. S.: MAA-like absorbing substances in Florida Keys phytoplankton vary with distance from shore and CDOM: Implications for coral reefs, JEMBE, 420, 91–98, 2012.
Baker, A. C., Glynn, P. W., and Riegl, B.: Climate change and coral reef bleaching: an ecological assessment of long-term impacts, recovery trends and future outlooks, Estuar. Coast. Shelf S., 40, 435–471, 2008.
Beets, J., Lewand, L., and Zullo, E.: Marine community descriptions and maps of bays within the Virgin Islands National Park/Biosphere Reserve, Virgin Islands Resource Management Cooperative: Biosphere Research Report 2. US Department of the Interior, National Park Service, 117 pp., 1986.
Berkelmans, R.: Time-integrated thermal bleaching thresholds of reefs and their variation on the Great Barrier Reef, Mar. Ecol. Prog. Ser., 229, 73–82, 2002.
Bongaerts, P., Ridgway, T., Sampayo, E. M., and Hoegh-Guldberg, O.: Assessing the "deep reef refugia" hypothesis: focus on Caribbean reefs, Coral Reefs, 29, 309–327, 2010.
Burke, L. M., Reytar, K., Spalding, M., and Perry, A.: Reefs at risk revisited, World Resources Institute, Washington, DC, 114 pp., 2011.
Chollett, I., Mumby, P. J., and Cortes, J.: Upwelling areas do not guarantee refuge for coral reefs in a warming ocean, Mar. Ecol. Prog. Ser., 416, 47–56, 2010.
Dean, W. E.: Determination of carbonate and organic matter in calcareous sediments and sedimentary rocks by loss on ignition: comparison with other methods, J. Sed. Pet., 44, 242–248, 1974.
Dickson, A. G.: Standard potential for the reaction: AgCl(s) + 1/2 H2(g) = Ag(s) + HCl(aq), and the standard acidity constant of the ion HSO4- in synthetic seawater from 273.15 to 318.15 K, J. Chem. Therm., 22, 113–127, 1990.
Dickson, A. G. and Millero, J. J.: A comparison of the equilibrium constants for the dissociation of carbonic acid in seawater media, Deep-Sea Res., 34, 1733–1743, 1987.
Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best practices for ocean CO2 measurements, in: PICES Special Publication, 3, 191 pp., 2007.
Eakin, C. M., Lough, J. M., and Heron, S. F.: Climate variability and change: monitoring data and evidence for increased coral bleaching stress, in: Coral Bleaching, Springer, Heidelberg, Germany, 41–67, 2009.
Fabricius, K. E., Langdon, C., Uthicke, S., Humphrey, C., Noonan, S., De'ath, G., Okazaki R., Muehllehner, N., Glas, M. S., and Lough, J. M.: Losers and winners in coral reefs acclimatized to elevated carbon dioxide concentrations, Nat. Clim. Change, 1, 165–169, 2011.
Fine, M., Gildor, H., and Genin, A.: A coral reef refuge in the Red Sea, Glob. Change Biol., 19, 3640–3647, 2013.
Fitt, W. K. and Warner, M. E.: Bleaching patterns of four species of Caribbean reef corals, Biol. Bull., 189, 298–307, 1995.
Fitt, W. K., Brown, B. E., Warner, M. E., and Dunne, P.: Coral bleaching: interpretation of thermal tolerance limits and thermal thresholds in tropical corals, Coral Reefs, 20, 51–65, 2001.
Folk, R. L.: Petrology of Sedimentary Rocks, Hemphill Publishing Company, Austin, 37–38, 1965.
Gibbs, R. J.: A settling tube for sand-sized analysis, J. Sed. Pet., 44, 583–588, 1974.
Glynn, P. W.: Coral reef bleaching: facts, hypotheses and implications, Global Change Biol., 2, 495–509, 1996.
Graham, N. A. J., Cinner, J. E., Norstrom, A. V., and Nystrom, M.: Coral reefs as novel ecosystems: embracing new futures, Curr. Opin. Environ. Sustain., 7, 9–14, 2014.
Hoegh-Guldberg, O.: Coral reef ecosystems and anthropogenic climate change, Reg. Env. Change, 11, S215–227, 2011.
Hoegh-Guldberg, O., Mumby, P. J., Hooten, A. J., Steneck, R. S., Greenfield, P., Gomez, E., Harvell, C. D., Sale, P. F., Edwards, A. J., Caldeira, K., Knowlton, N., Eakin, C. M., Iglesias-Prieto, R., Muthiga, N., Bradbury, R. H., Dubi, A., and Hatziolos, M. E.: Coral reefs under rapid climate change and ocean acidification, Science, 318, 1737–1742, 2007.
van Hooidonk, R., Manyard, J. A., Manzello, D., and Planes, S.: Opposite latitudinal gradients in projected ocean acidification and bleaching impacts on coral reefs, Glob. Change Biol., 20, 103–112, 2014.
Hopley, D., Slocombe, A. M., Muir, F., and Grant, C.: Nearshore fringing reefs in North Queensland, Coral Reefs, 1, 151–160, 1983.
Karnauskas, K. and Cohen, A.: Equatorial refuge amid tropical warming, Nat. Clim. Change, 2, 530–534, 2012.
Keller, B. D., Gleason, D. F., McLeod, E., Woodley, C. M., Airame, S., Causey, B. D., Friedlander, A. M., Grober-Dunsmore, R., Johnson, J. E., Miller, S. L., and Steneck, R. S.: Climate change, coral reef ecosystems, and management options for marine protected areas, Environ. Manage., 44, 1069–1088, 2009.
Keppel, G., Van Niel, K. P., Wardell-Johnson, G. W., Yates, C. J., Byrne, M., Mucina, L., Schut, A. G. T., Hopper, S. D., and Franklin, S. E.: Refugia: identifying and understanding safe havens for biodiversity under climate change, Global Ecol. Biogeogr., 21, 393–404, 2012.
Kleypas, J. A. and Yates, K. K.: Coral reefs and ocean acidification, Oceanography, 22, 108–117, 2009.
Kleypas, J. A., Anthony, K. R. N., and Gattuso, J-P.: Coral reefs modify their seawater carbon chemistry – study from a barrier reef (Moorea, French Polynesia), Glob. Change Biol., 17, 3667–3678, 2011.
Langdon, C., Broecker, W. S., Hammond, D. E., Glenn, E., Fitzsimmons, K., Nelson, S. G., Peng, T.-H., Hajdas, I., and Bonani, G.: Effect of elevated CO2 on the community metabolism of an experimental coral reef, Global Biogeochem. Cy., 17, 11-1–11-14, 2003.
Lesser, M. P.: Coral bleaching: causes and mechanisms, in: Coral Reefs: An Ecosystem in Transition, Springer, Dordrecht, 405–419, 2011.
Macintyre, I. G., Goodbody, I., Rutzler, K., Littler, D. S., and Littler, M. M.: A general biological and geological survey of the rims of ponds in the major mangrove islands of the Pelican Cays, Belize, Atoll Res. Bull., 467, 13–44, 2000.
Manzello, D. P., Enochs, I. C., Melo, N., Gledhill, D. K., and Johns, E. M.: Ocean acidification refugia of the Florida Reef Tract, PLoS ONE, 7, e41715, https://doi.org/10.1371/journal.pone.0041715, 2012.
McClanahan, T. R., Maina, J. M., and Muthiga, N. A: Associations between climate stress and coral reef diversity in the western Indian Ocean, Glob. Change Biol., 17, 2023–2032, 2011.
McKenzie, S.: Influence of oceanographic processes on the distribution of coral communities in Hurricane Hole, St. John, United States Virgin Islands, MS thesis, University of the Virgin Islands, US Virgin Islands, 51 pp., 2012.
Menza, C., Kendall, M., Rogers, C., and Miller, J.: A deep reef in deep trouble, Continent. Shelf Res., 27, 2224–2230, 2007.
Merbach, C., Culberson, C. H., Hawley, J. E., and Pytdowicz, R. M.: Measurement of the apparent dissociation constants of carbonic acid in seawater at atmospheric pressure, Limnol. Oceanogr., 18, 897–907, 1973.
Miller, J., Muller, E., Rogers, C., Waara, R., Atkinson, A., Whelan, K. R. T., Patterson, M., and Witcher, B.: Coral disease following massive bleaching in 2005 causes 60
Milliman, J. D.: Marine Carbonates, Springer-Verlag, New York, 1974.
Mumby, P. J. and Steneck, R. S.: Coral reef management and conservation in light of rapidly evolving ecological paradigms, Trends Ecol. Evol., 23, 555–563, 2008.
Mumby, P. J., Chisholm, J. R. M., Edwards, A. J., Andrefouet, S., and Jaubert, J.: Cloudy weather may have saved Society Island reef corals during the 1998 ENSO event, Mar. Ecol. Prog. Ser., 222, 209–216, 2001.
National Park Service South Florida/Caribbean Network: Annual administrative report (FY 2011) and work plan (FY 2012) for inventories and vital signs monitoring: South Florida/Caribbean Network, Natural Resource Report NPS/SFCN/NRR, National Park Service, Fort Collins, Colorado, 2012/488, 2012.
Neumann, A. C. and Macintyre, I.: Reef response to sea level rise: keep-up, catch-up or give up, in: Proceedings of the Fifth International Coral Reef Congress, 3, Tahiti, 27 May – 1 June 1985, 105–110, 1985.
Oliver, T. A. and Palumbi, S. R.: Do fluctuating temperature environments elevate coral thermal tolerance?, Coral Reefs, 30, 429–440, 2011.
Palumbi, S. R., Barshis, D. J., Traylor-Knowles, N, and Bay, R. A.: Mechanisms of reef coral resistance to future climate change, Science, 344, 895–898, 2014.
Pierrot, D. E., Lewis, E., and Wallace, D. W. R.: Ms Excel program developed for CO2 system calculations, ORNL/CDIAC-105a, Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US Department of Energy, Oak Ridge, Tennessee, 2006.
Rankin, D. W.: Geology of St. John, US Virgin Islands, US Dept. of Interior, 1631 pp., 2002.
Riegl, B. and Piller, W. E.: Possible refugia for reefs in times of environmental stress, Int. J. Earth Sci., 92, 520–531, 2003.
Rogers, C. S.: Coral reef resilience through biodiversity, ISRN Oceanography: Article ID 739034, 18 pp., 2013.
Rogers, C. S. and Herlan, J. J.: Life on the edge: corals in mangroves and climate change, in: Proceedings of the 12th International Coral Reef Symposium, Cairns, Australia, 5 pp., 2012.
Rogers, C. S., Miller, J., Muller, E. M., Edmunds, P., Nemeth, R. S., Beets, J. P., Friedlander, A. M., Smith, T. B., Boulon, R., Jeffrey, C. F. G., Menza, C., Caldow, C., Idrisi, N., Kojis, B., Monaco, M. E., Spitzack, A., Gladfelter, E. H., Ogden, J. C., Hillis-Starr, Z., Lundgren, I., Schill, W. B., Kuffner, I. B., Richardson, L. L., Devine, B., Voss, J.: Ecology of Coral Reefs in the US Virgin Islands, Chapter 8, in: Riegl, B. and Dodge, R. E., Coral Reefs of the USA, Springer, 303–374, 2008.
Rutzler, K., Diaz, M. C., Van Soest, R. W. M., Zea, S., Smith, K. P., Alvarez, B., and Wulff, J.: Diversity of sponge fauna in mangrove ponds, Pelican Cays, Belize, Atoll Res. Bull., 229, 466–495, 2000.
Salm, R. V., Done, T., and Mcleod, E.: Marine protected area planning in a changing climate, in: Coral Reefs and Climate Change: Science and Management, American Geophysical Union, Washington, DC, 207–221, 2006.
Semesi, S., Beer, S., and Bjork, M.: Seagrass photosynthesis controls rates of calcification and photosynthesis of calcareous macroalgae in a tropical seagrass meadow, Mar. Ecol. Prog. Ser., 382, 41–47, 2009a.
Semesi, S., Kangwe, J., and Bjork, M.: Alterations in pH and CO2 affect calcification and photosynthesis in the tropical coralline alga, Hydrolithon sp. (Rhodophyta), Estuar. Coastal Shelf S., 84, 337–341, 2009b.
Silverman, J., Lazar, B., Cao, L., Caldeira, K., and Erez, J.: Coral reefs may start dissolving when atmospheric CO2 doubles, Geophys. Res. Lett., 36, L05606, https://doi.org/10.1029/2008GL036282, 2009.
Smith, T. B., Blondeau, J., Nemeth, R. S., Pittman, S. J., Calnan, J. M., Kadison, E., and Gass, J.: Benthic structure and cryptic mortality in a Caribbean mesophotic coral reef bank system, the Hind Bank Marine Conservation District, US Virgin Islands, Coral Reefs, 29, 289–308, 2010.
Suzuki, S. and Kawahata, H.: Carbon budget of coral reef systems: an overview of observations in fringing reefs, barrier reefs and atolls in the Indo-Pacific regions, Tellus 55B, 428–444, 2003.
West, J. M. and Salm, R. V.: Resistance and resilience to coral bleaching: implications for coral reef conservation and management, Cons. Biol., 17, 956–967, 2003.
Whelan, K. R. T., Miller, J., Sanchez, O., and Patterson, M.: Impact of the 2005 coral bleaching event on Porites porites and Colpophyllia natans at Tektite Reef, US Virgin Islands, Coral Reefs, 26, 689–693, 2007.
van Woesik, R., Houk, P., Isechal, A. L., Idechong, J. W., Victor, S., and Golbuu, Y.: Climate change refugia in the sheltered bays of Palau: analogs of future reefs, Ecol. Evol, 2, 2472–2484, 2012.
Yamamoto, S., Kayanne, H., Terai, M., Watanabe, A., Kato, K., Negishi, A., and Nozaki, K.: Threshold of carbonate saturation state determined by CO2 control experiment, Biogeosciences, 9, 1441–1450, https://doi.org/10.5194/bg-9-1441-2012, 2012.
Yao, W. and Byrne, R. H. Simplified seawater alkalinity analysis: use of linear array spectrometers, Deep-Sea Res. Part 1, 45, 1383–1392, 1998.
Yates, K. K. and Halley, R. B.: CO32− concentration and pCO2 thresholds for calcification and dissolution on the Molokai reef flat, Hawaii, Biogeosciences, 3, 357–369, https://doi.org/10.5194/bg-3-357-2006, 2006.
Zepp, R. G., Shank, G. C., Stabenau, E., Patterson, K. W., Cyterski, M., Fisher, W., Bartels, E., and Anderson, S. L.: Spatial and temporal variability of solar ultraviolet exposure of coral assemblages in the Florida Keys: importance of colored dissolved organic matter, Limnol. Oceanogr., 53, 1909–1922, 2008.
Zhang, H. and Byrne, R. H.: Spectrophotometric pH measurements of surface seawater at in-situ conditions: absorbance and protonation behavior of thymol blue, Mar. Chem., 52, 17–25, 1996.
Altmetrics
Final-revised paper
Preprint