Articles | Volume 14, issue 5
https://doi.org/10.5194/bg-14-1189-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-1189-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
13 Mar 2017
Research article |
| 13 Mar 2017
Ice nucleators, bacterial cells and Pseudomonas syringae in precipitation at Jungfraujoch
Emiliano Stopelli
CORRESPONDING AUTHOR
Environmental Geosciences, University of Basel, 4056 Basel,
Switzerland
Invited contribution by Emiliano Stopelli, recipient of the EGU Outstanding Student Poster and PICO (OSPP) Awards 2016.
Environmental Geosciences, University of Basel, 4056 Basel,
Switzerland
Caroline Guilbaud
INRA PACA, UR 0407 Plant Pathology Research Unit, 84143 Montfavet,
France
Jakob Zopfi
Acquatic and Stable Isotope Biogeochemistry, University of Basel, 4056
Basel, Switzerland
Christine Alewell
Environmental Geosciences, University of Basel, 4056 Basel,
Switzerland
Cindy E. Morris
INRA PACA, UR 0407 Plant Pathology Research Unit, 84143 Montfavet,
France
Related authors
Emiliano Stopelli, Franz Conen, Cindy E. Morris, Erik Herrmann, Stephan Henne, Martin Steinbacher, and Christine Alewell
Atmos. Chem. Phys., 16, 8341–8351, https://doi.org/10.5194/acp-16-8341-2016, https://doi.org/10.5194/acp-16-8341-2016, 2016
Short summary
Short summary
Knowing the variability of ice nucleating particles (INPs) helps determining their role in the formation of precipitation. Here we describe and predict the concentrations of INPs active at −8 °C in precipitation samples collected at Jungfraujoch (CH, 3580 m a.s.l.). A high abundance of these INPs can be expected whenever a coincidence of high wind speed and first precipitation from an air mass occurs. This expands the set of conditions where such INPs could affect the onset of precipitation.
E. Stopelli, F. Conen, L. Zimmermann, C. Alewell, and C. E. Morris
Atmos. Meas. Tech., 7, 129–134, https://doi.org/10.5194/amt-7-129-2014, https://doi.org/10.5194/amt-7-129-2014, 2014
Karl Espen Yttri, Are Bäcklund, Franz Conen, Sabine Eckhardt, Nikolaos Evangeliou, Markus Fiebig, Anne Kasper-Giebl, Avram Gold, Hans Gundersen, Cathrine Lund Myhre, Stephen Matthew Platt, David Simpson, Jason D. Surratt, Sönke Szidat, Martin Rauber, Kjetil Tørseth, Martin Album Ytre-Eide, Zhenfa Zhang, and Wenche Aas
Atmos. Chem. Phys., 24, 2731–2758, https://doi.org/10.5194/acp-24-2731-2024, https://doi.org/10.5194/acp-24-2731-2024, 2024
Short summary
Short summary
We discuss carbonaceous aerosol (CA) observed at the high Arctic Zeppelin Observatory (2017 to 2020). We find that organic aerosol is a significant fraction of the Arctic aerosol, though less than sea salt aerosol and mineral dust, as well as non-sea-salt sulfate, originating mainly from anthropogenic sources in winter and from natural sources in summer, emphasizing the importance of wildfires for biogenic secondary organic aerosol and primary biological aerosol particles observed in the Arctic.
Katrin Meusburger, Paolo Porto, Judith Kobler Waldis, and Christine Alewell
SOIL, 9, 399–409, https://doi.org/10.5194/soil-9-399-2023, https://doi.org/10.5194/soil-9-399-2023, 2023
Short summary
Short summary
Quantifying soil redistribution rates is a global challenge. Radiogenic tracers such as plutonium, namely 239+240Pu, released to the atmosphere by atmospheric bomb testing in the 1960s are promising tools to quantify soil redistribution. Direct validation of 239+240Pu as soil redistribution is, however, still missing. Here, we used a unique sediment yield time series in southern Italy, reaching back to the initial fallout of 239+240Pu to verify 239+240Pu as a soil redistribution tracer.
Charlotte Decock, Juhwan Lee, Matti Barthel, Elizabeth Verhoeven, Franz Conen, and Johan Six
Biogeosciences Discuss., https://doi.org/10.5194/bg-2022-221, https://doi.org/10.5194/bg-2022-221, 2022
Preprint withdrawn
Short summary
Short summary
One of the least well understood processes in the nitrogen (N) cycle is the loss of nitrogen gas (N2), referred to as total denitrification. This is mainly due to the difficulty of quantifying total denitrification in situ. In this study, we developed and tested a novel modeling approach to estimate total denitrification over the depth profile, based on concentrations and isotope values of N2O. Our method will help close N budgets and identify management strategies that reduce N pollution.
Claudia Mignani, Lukas Zimmermann, Rigel Kivi, Alexis Berne, and Franz Conen
Atmos. Chem. Phys., 22, 13551–13568, https://doi.org/10.5194/acp-22-13551-2022, https://doi.org/10.5194/acp-22-13551-2022, 2022
Short summary
Short summary
We determined over the course of 8 winter months the phase of clouds associated with snowfall in Northern Finland using radiosondes and observations of ice particle habits at ground level. We found that precipitating clouds were extending from near ground to at least 2.7 km altitude and approximately three-quarters of them were likely glaciated. Possible moisture sources and ice formation processes are discussed.
Pedro V. G. Batista, Peter Fiener, Simon Scheper, and Christine Alewell
Hydrol. Earth Syst. Sci., 26, 3753–3770, https://doi.org/10.5194/hess-26-3753-2022, https://doi.org/10.5194/hess-26-3753-2022, 2022
Short summary
Short summary
Patchy agricultural landscapes have a large number of small fields, which are separated by linear features such as roads and field borders. When eroded sediments are transported out of the agricultural fields by surface runoff, these features can influence sediment connectivity. By use of measured data and a simulation model, we demonstrate how a dense road network (and its drainage system) facilitates sediment transport from fields to water courses in a patchy Swiss agricultural catchment.
Cyril Brunner, Benjamin T. Brem, Martine Collaud Coen, Franz Conen, Martin Steinbacher, Martin Gysel-Beer, and Zamin A. Kanji
Atmos. Chem. Phys., 22, 7557–7573, https://doi.org/10.5194/acp-22-7557-2022, https://doi.org/10.5194/acp-22-7557-2022, 2022
Short summary
Short summary
Microscopic particles called ice-nucleating particles (INPs) are essential for ice crystals to form in clouds. INPs are a tiny proportion of atmospheric aerosol, and their abundance is poorly constrained. We study how the concentration of INPs changes diurnally and seasonally at a mountaintop station in central Europe. Unsurprisingly, a diurnal cycle is only found when considering air masses that have had lower-altitude ground contact. The highest INP concentrations occur in spring.
Franz Conen, Annika Einbock, Claudia Mignani, and Christoph Hüglin
Atmos. Chem. Phys., 22, 3433–3444, https://doi.org/10.5194/acp-22-3433-2022, https://doi.org/10.5194/acp-22-3433-2022, 2022
Short summary
Short summary
Above western Europe, ice typically starts to form in clouds a few kilometres above the ground if suitable aerosol particles are present. In air masses typical for that altitude, we found that such particles most likely originate from bacteria and fungi living on plants. Occasional Saharan dust intrusions seem to contribute little to the number concentration of particles able to freeze cloud droplets between 0°C and −15°C.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
Short summary
Short summary
Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Cyril Brunner, Benjamin T. Brem, Martine Collaud Coen, Franz Conen, Maxime Hervo, Stephan Henne, Martin Steinbacher, Martin Gysel-Beer, and Zamin A. Kanji
Atmos. Chem. Phys., 21, 18029–18053, https://doi.org/10.5194/acp-21-18029-2021, https://doi.org/10.5194/acp-21-18029-2021, 2021
Short summary
Short summary
Special microscopic particles called ice-nucleating particles (INPs) are essential for ice crystals to form in the atmosphere. INPs are sparse and their atmospheric concentration and properties are not well understood. Mineral dust particles make up a significant fraction of INPs but how much remains unknown. Here, we address this knowledge gap by studying periods when mineral particles are present in large quantities at a mountaintop station in central Europe.
Lauren Zweifel, Maxim Samarin, Katrin Meusburger, and Christine Alewell
Nat. Hazards Earth Syst. Sci., 21, 3421–3437, https://doi.org/10.5194/nhess-21-3421-2021, https://doi.org/10.5194/nhess-21-3421-2021, 2021
Short summary
Short summary
Mountainous grassland areas can be severely affected by soil erosion, such as by shallow landslides. With an automated mapping approach we are able to locate shallow-landslide sites on aerial images for 10 different study sites across Swiss mountain regions covering a total of 315 km2. Using a statistical model we identify important explanatory variables for shallow-landslide occurrence for the individual sites as well as across all regions, which highlight slope, aspect and terrain roughness.
Sigrid van Grinsven, Kirsten Oswald, Bernhard Wehrli, Corinne Jegge, Jakob Zopfi, Moritz F. Lehmann, and Carsten J. Schubert
Biogeosciences, 18, 3087–3101, https://doi.org/10.5194/bg-18-3087-2021, https://doi.org/10.5194/bg-18-3087-2021, 2021
Short summary
Short summary
Lake Lovojärvi is a nutrient-rich lake with high amounts of methane at the bottom, but little near the top. Methane comes from the sediment and rises up through the water but is consumed by microorganisms along the way. They use oxygen if available, but in deeper water layers, no oxygen was present. There, nitrite, iron and humic substances were used, besides a collaboration between photosynthetic organisms and methane consumers, in which the first produced oxygen for the latter.
Maral Khodadadi, Christine Alewell, Mohammad Mirzaei, Ehssan Ehssan-Malahat, Farrokh Asadzadeh, Peter Strauss, and Katrin Meusburger
SOIL Discuss., https://doi.org/10.5194/soil-2021-2, https://doi.org/10.5194/soil-2021-2, 2021
Revised manuscript not accepted
Short summary
Short summary
Forest soils store carbon and therefore play an important role in mitigating climate change impacts. Yet again, deforestation for farming and grazing purposes has grown rapidly over the last decades. Thus, its impacts on soil erosion and soil quality should be understood in order to adopt sustainable management measures. The results of this study indicated that deforestation can prompt soil loss by multiple orders of magnitude and deteriorate the soil quality in both topsoil and subsoil.
Claudia Mignani, Jörg Wieder, Michael A. Sprenger, Zamin A. Kanji, Jan Henneberger, Christine Alewell, and Franz Conen
Atmos. Chem. Phys., 21, 657–664, https://doi.org/10.5194/acp-21-657-2021, https://doi.org/10.5194/acp-21-657-2021, 2021
Short summary
Short summary
Most precipitation above land starts with ice in clouds. It is promoted by extremely rare particles. Some ice-nucleating particles (INPs) cause cloud droplets to already freeze above −15°C, a temperature at which many clouds begin to snow. We found that the abundance of such INPs among other particles of similar size is highest in precipitating air masses and lowest when air carries desert dust. This brings us closer to understanding the interactions between land, clouds, and precipitation.
Lena Wohlgemuth, Stefan Osterwalder, Carl Joseph, Ansgar Kahmen, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 17, 6441–6456, https://doi.org/10.5194/bg-17-6441-2020, https://doi.org/10.5194/bg-17-6441-2020, 2020
Short summary
Short summary
Mercury uptake by trees from the air represents an important but poorly quantified pathway in the global mercury cycle. We determined mercury uptake fluxes by leaves and needles at 10 European forests which were 4 times larger than mercury deposition via rainfall. The amount of mercury taken up by leaves and needles depends on their age and growing height on the tree. Scaling up our measurements to the forest area of Europe, we estimate that each year 20 t of mercury is taken up by trees.
Miriam Groß-Schmölders, Pascal von Sengbusch, Jan Paul Krüger, Kristy Klein, Axel Birkholz, Jens Leifeld, and Christine Alewell
SOIL, 6, 299–313, https://doi.org/10.5194/soil-6-299-2020, https://doi.org/10.5194/soil-6-299-2020, 2020
Short summary
Short summary
Degradation turns peatlands into a source of CO2. There is no cost- or time-efficient method available for indicating peatland hydrology or the success of restoration. We found that 15N values have a clear link to microbial communities and degradation. We identified trends in natural, drained and rewetted conditions and concluded that 15N depth profiles can act as a reliable and efficient tool for obtaining information on current hydrology, restoration success and drainage history.
Pranav Hirave, Guido L. B. Wiesenberg, Axel Birkholz, and Christine Alewell
Biogeosciences, 17, 2169–2180, https://doi.org/10.5194/bg-17-2169-2020, https://doi.org/10.5194/bg-17-2169-2020, 2020
Short summary
Short summary
Sediment input into water bodies is a prominent threat to freshwater ecosystems. We tested the stability of tracers employed in freshwater sediment tracing based on compound-specific isotope analysis during early degradation in soil. While bulk δ13C values showed no stability, δ13C values of plant-derived fatty acids and n-alkanes were stably transferred to the soil without soil particle size dependency after an early degradation in organic horizons, thus indicating their suitability as tracers.
Adeline N. Y. Cojean, Jakob Zopfi, Alan Gerster, Claudia Frey, Fabio Lepori, and Moritz F. Lehmann
Biogeosciences, 16, 4705–4718, https://doi.org/10.5194/bg-16-4705-2019, https://doi.org/10.5194/bg-16-4705-2019, 2019
Short summary
Short summary
Our results demonstrate the importance of oxygen in regulating the fate of nitrogen (N) in the sediments of Lake Lugano south basin, Switzerland. Hence, our study suggests that, by changing oxygen concentration in bottom waters, the seasonal water column turnover may significantly regulate the partitioning between N removal and N recycling in surface sediments, and it is likely that a similar pattern can be expected in a wide range of environments.
Anna T. Kunert, Mira L. Pöhlker, Kai Tang, Carola S. Krevert, Carsten Wieder, Kai R. Speth, Linda E. Hanson, Cindy E. Morris, David G. Schmale III, Ulrich Pöschl, and Janine Fröhlich-Nowoisky
Biogeosciences, 16, 4647–4659, https://doi.org/10.5194/bg-16-4647-2019, https://doi.org/10.5194/bg-16-4647-2019, 2019
Short summary
Short summary
A screening of more than 100 strains from 65 different species revealed that the ice nucleation activity within the fungal genus Fusarium is more widespread than previously assumed. Filtration experiments suggest that the single cell-free Fusarium IN is smaller than 100 kDa (~ 6 nm) and that aggregates can be formed in solution. Exposure experiments, freeze–thaw cycles, and long-term storage tests demonstrate a high stability of Fusarium IN under atmospherically relevant conditions.
Jessie M. Creamean, Claudia Mignani, Nicolas Bukowiecki, and Franz Conen
Atmos. Chem. Phys., 19, 8123–8140, https://doi.org/10.5194/acp-19-8123-2019, https://doi.org/10.5194/acp-19-8123-2019, 2019
Short summary
Short summary
Aerosols that serve as seeds for cloud ice formation are important to study because they impact cloud radiative properties, lifetime, and precipitation formation. We present an investigation of ice-nucleating particles (INPs) from aerosol, rime, and snow samples collected in clear and cloudy conditions during winter storms in the Swiss Alsp. INPs were more abundant and effective when storms originated from the south. We use spectral characteristics to investigate warm versus cold mode INPs.
Marlène Lavrieux, Axel Birkholz, Katrin Meusburger, Guido L. B. Wiesenberg, Adrian Gilli, Christian Stamm, and Christine Alewell
Biogeosciences, 16, 2131–2146, https://doi.org/10.5194/bg-16-2131-2019, https://doi.org/10.5194/bg-16-2131-2019, 2019
Short summary
Short summary
A fingerprinting approach using compound-specific stable isotopes was applied to a lake sediment core to reconstruct erosion processes over the past 150 years in a Swiss catchment. Even though the reconstruction of land use and eutrophication history was successful, the observation of comparatively low δ13C values of plant-derived fatty acids in the sediment suggests their alteration within the lake. Thus, their use as a tool for source attribution in sediment cores needs further investigation.
Naruki Hiranuma, Kouji Adachi, David M. Bell, Franco Belosi, Hassan Beydoun, Bhaskar Bhaduri, Heinz Bingemer, Carsten Budke, Hans-Christian Clemen, Franz Conen, Kimberly M. Cory, Joachim Curtius, Paul J. DeMott, Oliver Eppers, Sarah Grawe, Susan Hartmann, Nadine Hoffmann, Kristina Höhler, Evelyn Jantsch, Alexei Kiselev, Thomas Koop, Gourihar Kulkarni, Amelie Mayer, Masataka Murakami, Benjamin J. Murray, Alessia Nicosia, Markus D. Petters, Matteo Piazza, Michael Polen, Naama Reicher, Yinon Rudich, Atsushi Saito, Gianni Santachiara, Thea Schiebel, Gregg P. Schill, Johannes Schneider, Lior Segev, Emiliano Stopelli, Ryan C. Sullivan, Kaitlyn Suski, Miklós Szakáll, Takuya Tajiri, Hans Taylor, Yutaka Tobo, Romy Ullrich, Daniel Weber, Heike Wex, Thomas F. Whale, Craig L. Whiteside, Katsuya Yamashita, Alla Zelenyuk, and Ottmar Möhler
Atmos. Chem. Phys., 19, 4823–4849, https://doi.org/10.5194/acp-19-4823-2019, https://doi.org/10.5194/acp-19-4823-2019, 2019
Short summary
Short summary
A total of 20 ice nucleation measurement techniques contributed to investigate the immersion freezing behavior of cellulose particles – natural polymers. Our data showed several types of cellulose are able to nucleate ice as efficiently as some mineral dust samples and cellulose has the potential to be an important atmospheric ice-nucleating particle. Continued investigation/collaboration is necessary to obtain further insight into consistency or diversity of ice nucleation measurements.
Claudia Mignani, Jessie M. Creamean, Lukas Zimmermann, Christine Alewell, and Franz Conen
Atmos. Chem. Phys., 19, 877–886, https://doi.org/10.5194/acp-19-877-2019, https://doi.org/10.5194/acp-19-877-2019, 2019
Short summary
Short summary
A snow crystal can be generated from an ice nucleating particle or from an ice splinter. In this study we made use of the fact that snow crystals with a particular shape (dendrites) grow within a narrow temperature range (−12 to −17 °C) and can be analysed individually for the presence of an ice nucleating particle. Our direct approach revealed that only one in eight crystals contained such a particle and was of primary origin. The other crystals must have grown from ice splinters.
Franz Conen and Mikhail V. Yakutin
Biogeosciences, 15, 4381–4385, https://doi.org/10.5194/bg-15-4381-2018, https://doi.org/10.5194/bg-15-4381-2018, 2018
Federico Carotenuto, Teodoro Georgiadis, Beniamino Gioli, Christel Leyronas, Cindy E. Morris, Marianna Nardino, Georg Wohlfahrt, and Franco Miglietta
Atmos. Chem. Phys., 17, 14919–14936, https://doi.org/10.5194/acp-17-14919-2017, https://doi.org/10.5194/acp-17-14919-2017, 2017
Short summary
Short summary
A new model was developed to simulate cultivable bioaerosol emissions. The model is able to reproduce the average daily behavior of a Mediterranean grassland and may help in studying the abundance of such aerosols in the atmosphere and their potential impact on clouds and cloud processes. The model has been developed thanks to a newfound application of an old micrometeorological technique to measurements of cultivable microorganisms.
Franz Conen, Sabine Eckhardt, Hans Gundersen, Andreas Stohl, and Karl Espen Yttri
Atmos. Chem. Phys., 17, 11065–11073, https://doi.org/10.5194/acp-17-11065-2017, https://doi.org/10.5194/acp-17-11065-2017, 2017
Short summary
Short summary
Observation of ice nuclei active at −8 °C show that rainfall drives their abundance throughout all seasons and that they are equally distributed amongst coarse and fine fraction of PM10. Concurrent measurements of fungal spore markers suggest that some fraction of INP-8 may consist of fungal spores during the warm part of the year. Snow cover suppresses the aerosolisation of ice nuclei. Changes in snow cover and rainfall may affect atmospheric concentrations of ice nuclei in future.
Laura Arata, Katrin Meusburger, Alexandra Bürge, Markus Zehringer, Michael E. Ketterer, Lionel Mabit, and Christine Alewell
SOIL, 3, 113–122, https://doi.org/10.5194/soil-3-113-2017, https://doi.org/10.5194/soil-3-113-2017, 2017
Lea Steinle, Johanna Maltby, Tina Treude, Annette Kock, Hermann W. Bange, Nadine Engbersen, Jakob Zopfi, Moritz F. Lehmann, and Helge Niemann
Biogeosciences, 14, 1631–1645, https://doi.org/10.5194/bg-14-1631-2017, https://doi.org/10.5194/bg-14-1631-2017, 2017
Short summary
Short summary
Large amounts of methane are produced in anoxic, coastal sediments, from which it can seep into the overlying water column. Aerobic oxidation of methane (MOx) mediated by methanotrophic bacteria is an important sink for methane before its evasion to the atmosphere. In a 2-year seasonal study, we investigated the spatio-temporal variability of MOx in a seasonally hypoxic coastal inlet using radiotracer-based methods. In experiments, we assessed the effect of variable oxygen concentrations on MOx.
Simon Schmidt, Christine Alewell, Panos Panagos, and Katrin Meusburger
Hydrol. Earth Syst. Sci., 20, 4359–4373, https://doi.org/10.5194/hess-20-4359-2016, https://doi.org/10.5194/hess-20-4359-2016, 2016
Short summary
Short summary
We present novel research on the seasonal dynamics of the impact of rainfall (R-factor) on the mobilization of topsoil as soil erosion by water for Switzerland. A modeling approach was chosen that enables the dynamical mapping of the R-factor. Based on the maps and modeling results, we could investigate the spatial and temporal distribution of that factor, which is high for Switzerland. With these results, agronomists can introduce selective erosion control measures.
Emiliano Stopelli, Franz Conen, Cindy E. Morris, Erik Herrmann, Stephan Henne, Martin Steinbacher, and Christine Alewell
Atmos. Chem. Phys., 16, 8341–8351, https://doi.org/10.5194/acp-16-8341-2016, https://doi.org/10.5194/acp-16-8341-2016, 2016
Short summary
Short summary
Knowing the variability of ice nucleating particles (INPs) helps determining their role in the formation of precipitation. Here we describe and predict the concentrations of INPs active at −8 °C in precipitation samples collected at Jungfraujoch (CH, 3580 m a.s.l.). A high abundance of these INPs can be expected whenever a coincidence of high wind speed and first precipitation from an air mass occurs. This expands the set of conditions where such INPs could affect the onset of precipitation.
Christine Alewell, Axel Birkholz, Katrin Meusburger, Yael Schindler Wildhaber, and Lionel Mabit
Biogeosciences, 13, 1587–1596, https://doi.org/10.5194/bg-13-1587-2016, https://doi.org/10.5194/bg-13-1587-2016, 2016
Short summary
Short summary
Origin of suspended sediments in rivers is of crucial importance for optimization of catchment management. Sediment source attribution to a lowland river in central Switzerland with compound specific stable isotopes analysis (CSIA) indicated that 65 % of the suspended sediments originated from agricultural land during base flow, while forest was the dominant source during high flow. We achieved significant differences in CSIA signature from land uses dominated by C3 plant cultivation.
S. Osterwalder, J. Fritsche, C. Alewell, M. Schmutz, M. B. Nilsson, G. Jocher, J. Sommar, J. Rinne, and K. Bishop
Atmos. Meas. Tech., 9, 509–524, https://doi.org/10.5194/amt-9-509-2016, https://doi.org/10.5194/amt-9-509-2016, 2016
Short summary
Short summary
Human activities have increased mercury (Hg) cycling between land and atmosphere. To define landscapes as sinks or sources of Hg we have developed an advanced REA system for long-term measurements of gaseous elemental Hg exchange. It was tested in two contrasting environments: above Basel, Switzerland, and a peatland in Sweden. Both landscapes showed net Hg emission (15 and 3 ng m−2 h−1, respectively). The novel system will help to advance our understanding of Hg exchange on an ecosystem scale.
P. Amato, M. Joly, C. Schaupp, E. Attard, O. Möhler, C. E. Morris, Y. Brunet, and A.-M. Delort
Atmos. Chem. Phys., 15, 6455–6465, https://doi.org/10.5194/acp-15-6455-2015, https://doi.org/10.5194/acp-15-6455-2015, 2015
Short summary
Short summary
Mortality rate of typical bacterial aerosols (Pseudomonas species) was determined in a cloud simulation chamber. Ice nucleation activity remained unchanged for several hours in aerosolized cells, whether they were viable or not. Cloud increased the specific removal of ice nucleation active cells by precipitation. Survival was negatively impacted by the presence of cloud and by sulfates.
J. P. Krüger, J. Leifeld, S. Glatzel, S. Szidat, and C. Alewell
Biogeosciences, 12, 2861–2871, https://doi.org/10.5194/bg-12-2861-2015, https://doi.org/10.5194/bg-12-2861-2015, 2015
Short summary
Short summary
Biogeochemical soil parameters are studied to detect peatland degradation along a land use gradient (intensive, extensive, near-natural). Stable carbon isotopes, radiocarbon ages and ash content confirm peat growth in the near-natural bog but also indicate previous degradation. When the bog is managed extensively or intensively as grassland, all parameters indicate degradation and substantial C loss of the order of 18.8 to 42.9 kg C m-2.
B. G. Pummer, C. Budke, S. Augustin-Bauditz, D. Niedermeier, L. Felgitsch, C. J. Kampf, R. G. Huber, K. R. Liedl, T. Loerting, T. Moschen, M. Schauperl, M. Tollinger, C. E. Morris, H. Wex, H. Grothe, U. Pöschl, T. Koop, and J. Fröhlich-Nowoisky
Atmos. Chem. Phys., 15, 4077–4091, https://doi.org/10.5194/acp-15-4077-2015, https://doi.org/10.5194/acp-15-4077-2015, 2015
E. K. Bigg, S. Soubeyrand, and C. E. Morris
Atmos. Chem. Phys., 15, 2313–2326, https://doi.org/10.5194/acp-15-2313-2015, https://doi.org/10.5194/acp-15-2313-2015, 2015
Short summary
Short summary
We show that atmospheric load of ice nuclei is enhanced for up to 20 days after key rainfall events. The rate of enhancement decreases exponentially with time. Rainfall quantity and frequency are increased for a similar duration and with similar exponential decreases thereby supporting the notion of rainfall feedback.
We reveal series of significant feedback in rainfall patterns across Australia over the past century and marked changes in feedback patterns, and we indicate their locations.
A. D. Griffiths, F. Conen, E. Weingartner, L. Zimmermann, S. D. Chambers, A. G. Williams, and M. Steinbacher
Atmos. Chem. Phys., 14, 12763–12779, https://doi.org/10.5194/acp-14-12763-2014, https://doi.org/10.5194/acp-14-12763-2014, 2014
Short summary
Short summary
Radon detectors at Bern and Jungfraujoch were used to monitor the transport of radon-rich boundary layer air from the Swiss Plateau to the Alpine ridge. Radon was successfully used to discriminate between different types of vertical transport, using the shape of the diurnal cycle to identify days with upslope mountain winds. For many air-mass properties, however, the total land-surface influence (indicated by the radon concentration) was more decisive than the type of vertical transport.
K. Meusburger, G. Leitinger, L. Mabit, M. H. Mueller, A. Walter, and C. Alewell
Hydrol. Earth Syst. Sci., 18, 3763–3775, https://doi.org/10.5194/hess-18-3763-2014, https://doi.org/10.5194/hess-18-3763-2014, 2014
S. Stanchi, M. Freppaz, E. Ceaglio, M. Maggioni, K. Meusburger, C. Alewell, and E. Zanini
Nat. Hazards Earth Syst. Sci., 14, 1761–1771, https://doi.org/10.5194/nhess-14-1761-2014, https://doi.org/10.5194/nhess-14-1761-2014, 2014
J. P. Krüger, J. Leifeld, and C. Alewell
Biogeosciences, 11, 3369–3380, https://doi.org/10.5194/bg-11-3369-2014, https://doi.org/10.5194/bg-11-3369-2014, 2014
E. Stopelli, F. Conen, L. Zimmermann, C. Alewell, and C. E. Morris
Atmos. Meas. Tech., 7, 129–134, https://doi.org/10.5194/amt-7-129-2014, https://doi.org/10.5194/amt-7-129-2014, 2014
K. Meusburger, L. Mabit, J.-H. Park, T. Sandor, and C. Alewell
Biogeosciences, 10, 5627–5638, https://doi.org/10.5194/bg-10-5627-2013, https://doi.org/10.5194/bg-10-5627-2013, 2013
K. Meusburger, G. Leitinger, L. Mabit, M. H. Mueller, and C. Alewell
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-9505-2013, https://doi.org/10.5194/hessd-10-9505-2013, 2013
Preprint withdrawn
M. H. Mueller, R. Weingartner, and C. Alewell
Hydrol. Earth Syst. Sci., 17, 1661–1679, https://doi.org/10.5194/hess-17-1661-2013, https://doi.org/10.5194/hess-17-1661-2013, 2013
C. E. Morris, D. C. Sands, C. Glaux, J. Samsatly, S. Asaad, A. R. Moukahel, F. L. T. Gonçalves, and E. K. Bigg
Atmos. Chem. Phys., 13, 4223–4233, https://doi.org/10.5194/acp-13-4223-2013, https://doi.org/10.5194/acp-13-4223-2013, 2013
Related subject area
Biogeochemistry: Air - Land Exchange
Enhanced net CO2 exchange of a semideciduous forest in the southern Amazon due to diffuse radiation from biomass burning
Observational relationships between ammonia, carbon dioxide and water vapor under a wide range of meteorological and turbulent conditions: RITA-2021 campaign
Environmental controls of winter soil carbon dioxide fluxes in boreal and tundra environments
Origin of secondary fatty alcohols in atmospheric aerosols in a cool–temperate forest based on their mass size distributions
Sap flow and leaf gas exchange response to a drought and heatwave in urban green spaces in a Nordic city
Interpretability of negative latent heat fluxes from Eddy Covariance measurements during dry conditions
Changes in biogenic volatile organic compound emissions in response to the El Niño–Southern Oscillation
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Influence of plant ecophysiology on ozone dry deposition: comparing between multiplicative and photosynthesis-based dry deposition schemes and their responses to rising CO2 level
Modeling the interinfluence of fertilizer-induced NH3 emission, nitrogen deposition, and aerosol radiative effects using modified CESM2
Physiological and climate controls on foliar mercury uptake by European tree species
Radiation, soil water content, and temperature effects on carbon cycling in an alpine swamp meadow of the northeastern Qinghai–Tibetan Plateau
Representativeness assessment of the pan-Arctic eddy covariance site network and optimized future enhancements
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part I: Measuring temporal dynamics
Ideas and perspectives: Emerging contours of a dynamic exogenous kerogen cycle
Versatile soil gas concentration and isotope monitoring: optimization and integration of novel soil gas probes with online trace gas detection
On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes
Mercury accumulation in leaves of different plant types – the significance of tissue age and specific leaf area
Isolation of subpollen particles (SPPs) of birch: SPPs are potential carriers of ice nucleating macromolecules
Choosing an optimal β factor for relaxed eddy accumulation applications across vegetated and non-vegetated surfaces
Bioaerosols in the Amazon rain forest: temporal variations and vertical profiles of Eukarya, Bacteria, and Archaea
Ice nucleation by viruses and their potential for cloud glaciation
Carbon dioxide fluxes and carbon balance of an agricultural grassland in southern Finland
Sun-induced fluorescence and near-infrared reflectance of vegetation track the seasonal dynamics of gross primary production over Africa
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
Short summary
Short summary
The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
Short summary
Short summary
We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
Short summary
Short summary
We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
Short summary
Short summary
Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
Short summary
Short summary
Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek S. El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
EGUsphere, https://doi.org/10.5194/egusphere-2023-2556, https://doi.org/10.5194/egusphere-2023-2556, 2023
Short summary
Short summary
In this analysis, we compare weighing lysimeters and the eddy covariance (EC) method to test if EC is able to measure the adsorption of atmospheric water vapor by soils at night. We find this flux to occur frequently during dry nights in a Mediterranean ecosystem and 88.8 % of the EC-measured downward-directed vapor fluxes occur when at least one lysimeter detects soil vapor adsorption. The EC method underestimates however both, evaporation and soil vapor adsorption at the site.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
Short summary
Short summary
We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
Short summary
Short summary
The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
Short summary
Short summary
Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
Short summary
Short summary
Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
Short summary
Short summary
We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
Short summary
Short summary
This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
Short summary
Short summary
Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
Short summary
Short summary
Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
Short summary
Short summary
Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
Short summary
Short summary
As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
Short summary
Short summary
For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
Short summary
Short summary
We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
Short summary
Short summary
Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
Short summary
Short summary
Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
Short summary
Short summary
Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
Short summary
Short summary
Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
Short summary
Short summary
We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
Short summary
Short summary
The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
Short summary
Short summary
A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
Short summary
Short summary
The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
Short summary
Short summary
Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
Short summary
Short summary
This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
Short summary
Short summary
To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
Short summary
Short summary
This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
Short summary
Short summary
The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
Short summary
Short summary
Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
Short summary
Short summary
This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
Short summary
Short summary
We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
Short summary
Short summary
We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
Short summary
Short summary
Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
Short summary
Short summary
Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
Short summary
Short summary
Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
Short summary
Short summary
Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, and Christian Brümmer
Biogeosciences, 19, 389–413, https://doi.org/10.5194/bg-19-389-2022, https://doi.org/10.5194/bg-19-389-2022, 2022
Short summary
Short summary
Fluxes of total reactive nitrogen (∑Nr) over a low polluted forest were analyzed with regard to their temporal dynamics. Mostly deposition was observed with median fluxes ranging from −15 to −5 ng N m−2 s−1, corresponding to a range of deposition velocities from 0.2 to 0.5 cm s−1. While seasonally changing contributions of NH3 and NOx to the ∑Nr signal were found, we estimate an annual total N deposition (dry+wet) of 12.2 and 10.9 kg N ha−1 a−1 in the 2 years of observation.
Thomas M. Blattmann
Biogeosciences, 19, 359–373, https://doi.org/10.5194/bg-19-359-2022, https://doi.org/10.5194/bg-19-359-2022, 2022
Short summary
Short summary
This work enunciates the possibility of kerogen oxidation contributing to atmospheric CO2 increase in the wake of glacial episodes. This hypothesis is substantiated by several lines of independent evidence synthesized in this contribution. The author hypothesizes that the deglaciation of kerogen-rich lithologies in western Canada contributed to the characteristic deglacial increase in atmospheric CO2.
Juliana Gil-Loaiza, Joseph R. Roscioli, Joanne H. Shorter, Till H. M. Volkmann, Wei-Ren Ng, Jordan E. Krechmer, and Laura K. Meredith
Biogeosciences, 19, 165–185, https://doi.org/10.5194/bg-19-165-2022, https://doi.org/10.5194/bg-19-165-2022, 2022
Short summary
Short summary
We evaluated a new diffusive soil probe integrated with high-resolution gas analyzers to measure soil gases in real time at a centimeter scale. Using columns with simple silica and soil, we captured changes in carbon dioxide (CO2), volatile organic compounds (VOCs), and nitrous oxide (N2O) with its isotopes to distinguish potential nutrient sources and microbial metabolism. This approach will advance the use of soil gases as important signals to understand and monitor soil fertility and health.
Yujie Wang and Christian Frankenberg
Biogeosciences, 19, 29–45, https://doi.org/10.5194/bg-19-29-2022, https://doi.org/10.5194/bg-19-29-2022, 2022
Short summary
Short summary
Modeling vegetation canopy is important in predicting whether the land remains a carbon sink to mitigate climate change in the near future. Vegetation canopy model complexity, however, impacts the model-predicted carbon and water fluxes as well as canopy fluorescence, even if the same suite of model inputs is used. Given the biases caused by canopy model complexity, we recommend not misusing parameters inverted using different models or assumptions.
Håkan Pleijel, Jenny Klingberg, Michelle Nerentorp, Malin C. Broberg, Brigitte Nyirambangutse, John Munthe, and Göran Wallin
Biogeosciences, 18, 6313–6328, https://doi.org/10.5194/bg-18-6313-2021, https://doi.org/10.5194/bg-18-6313-2021, 2021
Short summary
Short summary
Mercury is a problematic metal in the environment. It is crucial to understand the Hg circulation in ecosystems. We explored the mercury concentration in foliage from a diverse set of plants, locations and sampling periods to study the accumulation of Hg in leaves–needles over time. Mercury was always higher in older tissue: in broadleaved trees, conifers and wheat. Specific leaf area, the leaf area per unit leaf mass, turned out to be critical for Hg accumulation in leaves–needles.
Julia Burkart, Jürgen Gratzl, Teresa M. Seifried, Paul Bieber, and Hinrich Grothe
Biogeosciences, 18, 5751–5765, https://doi.org/10.5194/bg-18-5751-2021, https://doi.org/10.5194/bg-18-5751-2021, 2021
Short summary
Short summary
Extracts of birch pollen grains are known to be ice nucleation active and thus impact cloud formation and climate. In this study we develop an extraction method to separate subpollen particles from ice nucleating macromolecules. Our results thereby illustrate that ice nucleating macromolecules can be washed off the subpollen particles and that the ice activity is linked to the presence of proteins.
Teresa Vogl, Amy Hrdina, and Christoph K. Thomas
Biogeosciences, 18, 5097–5115, https://doi.org/10.5194/bg-18-5097-2021, https://doi.org/10.5194/bg-18-5097-2021, 2021
Short summary
Short summary
The relaxed eddy accumulation technique is a method used for measuring fluxes of chemical species in the atmosphere. It relies on a proportionality factor, β, which can be determined using different methods. Also, different techniques for sampling can be used by only drawing air into the measurement system when vertical wind velocity exceeds a certain threshold. We compare different ways to obtain β and different threshold techniques to direct flux measurements for three different sites.
Maria Prass, Meinrat O. Andreae, Alessandro C. de Araùjo, Paulo Artaxo, Florian Ditas, Wolfgang Elbert, Jan-David Förster, Marco Aurélio Franco, Isabella Hrabe de Angelis, Jürgen Kesselmeier, Thomas Klimach, Leslie Ann Kremper, Eckhard Thines, David Walter, Jens Weber, Bettina Weber, Bernhard M. Fuchs, Ulrich Pöschl, and Christopher Pöhlker
Biogeosciences, 18, 4873–4887, https://doi.org/10.5194/bg-18-4873-2021, https://doi.org/10.5194/bg-18-4873-2021, 2021
Short summary
Short summary
Bioaerosols in the atmosphere over the Amazon rain forest were analyzed by molecular biological staining and microscopy. Eukaryotic, bacterial, and archaeal aerosols were quantified in time series and altitude profiles which exhibited clear differences in number concentrations and vertical distributions. Our results provide insights into the sources and dispersion of different Amazonian bioaerosol types as a basis for a better understanding of biosphere–atmosphere interactions.
Michael P. Adams, Nina S. Atanasova, Svetlana Sofieva, Janne Ravantti, Aino Heikkinen, Zoé Brasseur, Jonathan Duplissy, Dennis H. Bamford, and Benjamin J. Murray
Biogeosciences, 18, 4431–4444, https://doi.org/10.5194/bg-18-4431-2021, https://doi.org/10.5194/bg-18-4431-2021, 2021
Short summary
Short summary
The formation of ice in clouds is critically important for the planet's climate. Hence, we need to know which aerosol types nucleate ice and how effectively they do so. Here we show that virus particles, with a range of architectures, nucleate ice when immersed in supercooled water. However, we also show that they only make a minor contribution to the ice-nucleating particle population in the terrestrial atmosphere, but we cannot rule them out as being important in the marine environment.
Laura Heimsch, Annalea Lohila, Juha-Pekka Tuovinen, Henriikka Vekuri, Jussi Heinonsalo, Olli Nevalainen, Mika Korkiakoski, Jari Liski, Tuomas Laurila, and Liisa Kulmala
Biogeosciences, 18, 3467–3483, https://doi.org/10.5194/bg-18-3467-2021, https://doi.org/10.5194/bg-18-3467-2021, 2021
Short summary
Short summary
CO2 and H2O fluxes were measured at a newly established eddy covariance site in southern Finland for 2 years from 2018 to 2020. This agricultural grassland site focuses on the conversion from intensive towards more sustainable agricultural management. The first summer experienced prolonged dry periods, and notably larger fluxes were observed in the second summer. The field acted as a net carbon sink during both study years.
Anteneh Getachew Mengistu, Gizaw Mengistu Tsidu, Gerbrand Koren, Maurits L. Kooreman, K. Folkert Boersma, Torbern Tagesson, Jonas Ardö, Yann Nouvellon, and Wouter Peters
Biogeosciences, 18, 2843–2857, https://doi.org/10.5194/bg-18-2843-2021, https://doi.org/10.5194/bg-18-2843-2021, 2021
Short summary
Short summary
In this study, we assess the usefulness of Sun-Induced Fluorescence of Terrestrial Ecosystems Retrieval (SIFTER) data from the GOME-2A instrument and near-infrared reflectance of vegetation (NIRv) from MODIS to capture the seasonality and magnitudes of gross primary production (GPP) derived from six eddy-covariance flux towers in Africa in the overlap years between 2007–2014. We also test the robustness of sun-induced fluoresence and NIRv to compare the seasonality of GPP for the major biomes.
Cited articles
Amato, P., Parazols, M., Sancelme, M., Laj, P., Mailhot, G., and Delort, A. M.: Microorganisms isolated from the water phase of tropospheric clouds at the Puy de Dôme: major groups and growth abilities at low temperatures, FEMS Microbiol. Ecol., 59, 242–254, https://doi.org/10.1111/j.1574-6941.2006.00199.x, 2007.
Amato, P., Joly, M., Schaupp, C., Attard, E., Möhler, O., Morris, C. E., Brunet, Y., and Delort, A.-M.: Survival and ice nucleation activity of bacteria as aerosols in a cloud simulation chamber, Atmos. Chem. Phys., 15, 6455–6465, https://doi.org/10.5194/acp-15-6455-2015, 2015.
Bauer, H., Kasper-Giebl, A., and Lo, M.: The contribution of bacteria and fungal spores to the organic carbon content of cloud water, precipitation and aerosols, Atmos. Res., 64, 109–119, https://doi.org/10.1016/S0169-8095(02)00084-4, 2002.
Berge, O., Monteil, C. L., Bartoli, C., Chandeysson, C., Guilbaud, C., Sands, D. C., and Morris, C. E.: A user's guide to a data base of the diversity of Pseudomonas syringae and its application to classifying strains in this phylogenetic complex, PLoS ONE, 9, 105547, https://doi.org/10.1371/journal.pone.0105547, 2014.
Burrows, S. M., Butler, T., Jöckel, P., Tost, H., Kerkweg, A., Pöschl, U., and Lawrence, M. G.: Bacteria in the global atmosphere – Part 2: Modeling of emissions and transport between different ecosystems, Atmos. Chem. Phys., 9, 9281–9297, https://doi.org/10.5194/acp-9-9281-2009, 2009.
Cantrell, W. and Heymsfield, A.: Production of Ice in Tropospheric Clouds: A Review, B. Am. Meteorol. Soc., 86, 795–807, https://doi.org/10.1175/BAMS-86-6-795, 2005.
Conen, F., Morris, C. E., Leifeld, J., Yakutin, M. V., and Alewell, C.: Biological residues define the ice nucleation properties of soil dust, Atmos. Chem. Phys., 11, 9643–9648, https://doi.org/10.5194/acp-11-9643-2011, 2011.
Fröhlich-Nowoisky, J., Hill, T. C. J., Pummer, B. G., Yordanova, P., Franc, G. D., and Pöschl, U.: Ice nucleation activity in the widespread soil fungus Mortierella alpina, Biogeosciences, 12, 1057–1071, https://doi.org/10.5194/bg-12-1057-2015, 2015.
Guilbaud, C., Morris, C. E., Barakat, M., Ortet, P., and Berge, O.: Isolation and identification of Pseudomonas syringae facilitated by a PCR targeting the whole P. syringae group, FEMS Microbiol. Ecol., 92, 1–9, https://doi.org/10.1093/femsec/fiv146, 2016.
Hammer, Ø., Harper, D. A., and Ryan, P. D.: PAST: PAleontologi- cal STatistics software package for education and data analysis, Palaeontol. Electron., 4, 1–9, available at: http://palaeo-electronica.org/2001_1/past/issue1_01.htm (last access: 14 November 2016), 2001.
Hill, T. C. J., DeMott, P. J., Tobo, Y., Fröhlich-Nowoisky, J., Moffett, B. F., Franc, G. D., and Kreidenweis, S. M.: Sources of organic ice nucleating particles in soils, Atmos. Chem. Phys., 16, 7195–7211, https://doi.org/10.5194/acp-16-7195-2016, 2016.
IAEA International Atomic Energy Agency: Environmental isotopes in the hydrological cycle, Principles and applications, Vol. 2, Atmospheric Water, available at: http://www-naweb.iaea.org/napc/ih/IHS_resources_publication_hydroCycle_en.html (last access: 30 January 2017), 2001.
Joly, M., Attard, E., Sancelme, M., Deguillaume, L., Guilbaud, C., Morris, C. E., Amato, P., and Delort, A. M.: Ice nucleation activity of bacteria isolated from cloud water, Atmos. Environ., 70, 392–400, https://doi.org/10.1016/j.atmosenv.2013.01.027, 2013.
Joly, M., Amato, P., Deguillaume, L., Monier, M., Hoose, C., and Delort, A. M.: Quantification of ice nuclei active at near 0 °C temperatures in low-altitude clouds at the Puy de Dôme atmospheric station, Atmos. Chem. Phys., 14, 8185–8195, https://doi.org/10.5194/acp-14-8185-2014, 2014.
Lamichhane, J. R., Varvaro, L., Audergon, J. M., Parisi, L., and Morris, C. E.: Disease and frost damage of woody plants caused by Pseudomonas syringe: seeing the forest for the trees, in: Advances in Agronomy, edited by: Spark, D. L., Academic Press, 235–295, 2014.
Lamichhane, J. R., Messean, A., and Morris, C. E.: Insights into epidemiology and control of diseases of annual plants caused by the Pseudomonas syringae species complex, J. Gen. Plant Pathol., 81, 331–350, https://doi.org/10.1007/s10327-015-0605-z, 2015.
Lindemann, J. and Upper, C. D.: Aerial dispersal of epiphytic bacteria over bean plants, Appl. Environ. Microbiol., 50, 1229–1232, 1985.
Maki, L. R., Galyan, E. L., and Caldwell, D. R.: Ice Nucleation Induced by Pseudomonas syringae, Appl. Environ. Microb., 28, 456–459, 1974.
Möhler, O., DeMott, P. J., Vali, G., and Levin, Z.: Microbiology and atmospheric processes: the role of biological particles in cloud physics, Biogeosciences, 4, 1059–1071, https://doi.org/10.5194/bg-4-1059-2007, 2007.
Monteil, C. L., Guilbaud, C., Glaux, C., Lafolie, F., Soubeyrand, S., and Morris, C. E.: Emigration of the plant pathogen Pseudomonas syringae from leaf litter contributes to its population dynamics in alpine snowpack, Environ. Microbiol., 14, 2099–2112, https://doi.org/10.1111/j.1462-2920.2011.02680.x, 2012.
Monteil, C. L., Bardin, M., and Morris, C. E.: Features of air masses associated with the deposition of Pseudomonas syringae and Botrytis cinerea by rain and snowfall, ISME J., 8, 2290–2304, https://doi.org/10.1038/ismej.2014.55, 2014.
Morris, C. E., Sands, D. C., Vinatzer, B. A., Glaux, C., Guilbaud, C., Buffière, A., Yan, S., Dominguez, H., and Thompson, B. M.: The life history of the plant pathogen Pseudomonas syringae is linked to the water cycle, ISME J., 2, 321–334, https://doi.org/10.1038/ismej.2007.113, 2008.
Morris, C. E., D. C. Sands, J. L. Vanneste, J. Montarry, B. Oakley, Guilbaud, C., and Glaux, C.: Inferring the evolutionary history of the plant pathogen Pseudomonas syringae from its biogeography in headwaters of rivers in North America, Europe, and New Zealand, mBio, 1, e00107, https://doi.org/10.1128/mBio.00107-10, 2010.
Morris, C. E., Monteil, C. L., and Berge, O.: The life history of Pseudomonas syringae: linking agriculture to earth system processes, Annu. Rev. Phytopathol., 51, 85–104, https://doi.org/10.1146/annurev-phyto-082712-102402, 2013a.
Morris, C. E., Sands, D. C., Glaux, C., Samsatly, J., Asaad, S., Moukahel, A. R., Goncalves, F. I. T., and Bigg, K. E.: Urediospores of rust fungi are ice nucleation active at > −10 °C and harbor ice nucleation active bacteria, Atmos. Chem. Phys. 13, 4223–4233, https://doi.org/10.5194/acp-13-4223-2013, 2013b.
Morris, C. E., Conen, F., Huffman, J. A., Phillips, V., Pöschl, U., and Sands, D. C.: Bioprecipitation: a feedback cycle linking earth history, ecosystem dynamics and land use through biological ice nucleators in the atmosphere, Glob. Change Biol., 20, 341–351, https://doi.org/10.1111/gcb.12447, 2014.
Mülmenstädt, J., Sourdeval, O., Delanoë, J., and Quaas, J.: Frequency of occurrence of rain from liquid- , mixed- , and ice-phase clouds derived from A-Train satellite retrievals, Geophys. Res. Lett., 42, 6502–6509, https://doi.org/10.1002/2015GL064604, 2015.
Murray, B. J., O'Sullivan, D., Atkinson, J. D., and Webb, M. E.: Ice nucleation by particles immersed in supercooled cloud droplets, Chem. Soc. Rev., 41, 6519–6554, https://doi.org/10.1039/c2cs35200a, 2012.
O'Sullivan, D., Murray, B. J., Ross, J. F., Whale, T. F., Price, H. C., Atkinson, J. D., Umo, N. S., and Webb, M. E.: The relevance of nanoscale biological fragments for ice nucleation in clouds, Sci. Rep., 5, 8082, https://doi.org/10.1038/srep08082, 2015.
O'Sullivan, D., Murray, B. J., Ross, J. F., and Webb, M. E.: The adsorption of fungal ice-nucleating proteins on mineral dusts: a terrestrial reservoir of atmospheric ice-nucleating particles, Atmos. Chem. Phys., 16, 7879–7887, https://doi.org/10.5194/acp-16-7879-2016, 2016.
Pummer, B. G., Budke, C., Augustin-Bauditz, S., Niedermeier, D., Felgitsch, L., Kampf, C. J., Huber, R. G., Liedl, K. R., Loerting, T., Moschen, T., Schauperl, M., Tollinger, M., Morris, C. E., Wex, H., Grothe, H., Pöschl, U., Koop, T., and Fröhlich-Nowoisky, J.: Ice nucleation by water-soluble macromolecules, Atmos. Chem. Phys., 15, 4077–4091, https://doi.org/10.5194/acp-15-4077-2015, 2015.
Sands, D. C., Langhans, V. E., Scharen, A. L., and de Smet, G.: The association between bacteria and rain and possible resultant meteorological implications, J. Hungarian Meteorol. Serv., 86, 148–152, 1982.
Šantl-Temkiv, T., Finster, K., Dittmar, T., Hansen, B. M., Thyrhaug, R., Nielsen, W. N., and Karlson, U. G.: Hailstones: A Window into the Microbial and Chemical Inventory of a Storm Cloud, PLoS ONE, 8, e53550, https://doi.org/10.1371/journal.pone.0053550, 2013.
Sarkar, S. F. and Guttman, D. S.: Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen, Appl. Environ. Microbiol., 70, 1999–2012, https://doi.org/10.1128/AEM.70.4.1999-2012.2004, 2004.
Sattler, B., Puxbaum, H., and Psenner, R.: Bacterial growth in supercooled cloud droplets, Geophys. Res. Lett., 28, 239–242, 2001.
Stopelli, E., Conen, F., Zimmermann, L., Alewell, C., and Morris, C. E.: Freezing nucleation apparatus puts new slant on study of biological ice nucleators in precipitation, Atmos. Meas. Tech., 7, 129–134, https://doi.org/10.5194/amt-7-129-2014, 2014.
Stopelli, E., Conen, F., Morris, C. E., Herrmann, E., Bukowiecki, N., and Alewell, C.: Ice nucleation active particles are efficiently removed by precipitating clouds, Sci. Rep., 5, 16433, https://doi.org/10.1038/srep16433, 2015.
Stopelli, E., Conen, F., Morris, C. E., Herrmann, E., Henne, S., Steinbacher, M., and Alewell, C.: Predicting abundance and variability of ice nucleating particles in precipitation at the high-altitude observatory Jungfraujoch, Atmos. Chem. Phys., 16, 8341–8351, https://doi.org/10.5194/acp-16-8341-2016, 2016.
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S.: MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods, Mol. Biol. Evol., 28, 2731–2739, https://doi.org/10.1093/molbev/msr121, 2011.
Vaïtilingom, M., Attard, E., Gaiani, N., Sancelme, M., Deguillaume, L., Flossmann, A. I., Amato, P., and Delort, A. M.: Long-term features of cloud microbiology at the Puy de Dôme (France), Atmos. Environ., 58, 88–100, https://doi.org/10.1016/j.atmosenv.2012.03.072, 2012.
Short summary
Based on the analysis of precipitation collected at high altitude, this study provides a relevant advancement in the assessment of the major factors responsible for the abundance and variability of airborne bacterial cells and Pseudomonas syringae in relation to ice nucleators. This is of prime importance to obtain a better understanding of the impact of ice-nucleation-active organisms on the development of precipitation and to determine the dispersal potential of airborne microorganisms.
Based on the analysis of precipitation collected at high altitude, this study provides a...
Altmetrics
Final-revised paper
Preprint